Literature DB >> 32030637

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Haruki Nakamura1.   

Abstract

Year:  2020        PMID： 32030637      PMCID： PMC7242525          DOI： 10.1007/s12551-020-00628-1

Source DB:  PubMed          Journal:  Biophys Rev        ISSN： 1867-2450


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  12 in total

1.  Molecular architecture of the active mitochondrial protein gate.

Authors:  Takuya Shiota; Kenichiro Imai; Jian Qiu; Victoria L Hewitt; Khershing Tan; Hsin-Hui Shen; Noriyuki Sakiyama; Yoshinori Fukasawa; Sikander Hayat; Megumi Kamiya; Arne Elofsson; Kentaro Tomii; Paul Horton; Nils Wiedemann; Nikolaus Pfanner; Trevor Lithgow; Toshiya Endo
Journal:  Science       Date:  2015-09-25       Impact factor: 47.728

2.  Gaussian-input Gaussian mixture model for representing density maps and atomic models.

Authors:  Takeshi Kawabata
Journal:  J Struct Biol       Date:  2018-03-06       Impact factor: 2.867

3.  Reconstruction of low-resolution molecular structures from simulated atomic force microscopy images.

Authors:  Bhaskar Dasgupta; Osamu Miyashita; Florence Tama
Journal:  Biochim Biophys Acta Gen Subj       Date:  2019-08-28       Impact factor: 3.770

4.  Multiple subunit fitting into a low-resolution density map of a macromolecular complex using a gaussian mixture model.

Authors:  Takeshi Kawabata
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

5.  Validation of Structures in the Protein Data Bank.

Authors:  Swanand Gore; Eduardo Sanz García; Pieter M S Hendrickx; Aleksandras Gutmanas; John D Westbrook; Huanwang Yang; Zukang Feng; Kumaran Baskaran; John M Berrisford; Brian P Hudson; Yasuyo Ikegawa; Naohiro Kobayashi; Catherine L Lawson; Steve Mading; Lora Mak; Abhik Mukhopadhyay; Thomas J Oldfield; Ardan Patwardhan; Ezra Peisach; Gaurav Sahni; Monica R Sekharan; Sanchayita Sen; Chenghua Shao; Oliver S Smart; Eldon L Ulrich; Reiko Yamashita; Martha Quesada; Jasmine Y Young; Haruki Nakamura; John L Markley; Helen M Berman; Stephen K Burley; Sameer Velankar; Gerard J Kleywegt
Journal:  Structure       Date:  2017-11-22       Impact factor: 5.006

6.  Template-based quaternary structure prediction of proteins using enhanced profile-profile alignments.

Authors:  Tsukasa Nakamura; Toshiyuki Oda; Yoshinori Fukasawa; Kentaro Tomii
Journal:  Proteins       Date:  2017-12-05

7.  Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA.

Authors:  Hidetoshi Kono; Shun Sakuraba; Hisashi Ishida
Journal:  PLoS Comput Biol       Date:  2018-03-05       Impact factor: 4.475

Review 8.  The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations.

Authors:  Gert-Jan Bekker; Takeshi Kawabata; Genji Kurisu
Journal:  Biophys Rev       Date:  2020-02-05

9.  DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment.

Authors:  Hiroyuki Fukuda; Kentaro Tomii
Journal:  BMC Bioinformatics       Date:  2020-01-09       Impact factor: 3.169

10.  Protein Data Bank: the single global archive for 3D macromolecular structure data.

Authors: 
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971
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  3 in total

1.  Editorial for the Special Issue of Biophysical Reviews focused on the Biophysical Society of Japan with select scientific content from the 57th BSJ annual meeting, Miyazaki, Japan.

Authors:  Tamiki Komatsuzaki; Haruki Nakamura; Jeremy Tame; Saeko Yanaka; Takeharu Nagai; Kuniaki Nagayama
Journal:  Biophys Rev       Date:  2020-03-24

2.  Biophysical Reviews' national biophysical society partnership program.

Authors:  Damien Hall
Journal:  Biophys Rev       Date:  2020-04-29

3.  RIEDL tag: A novel pentapeptide tagging system for transmembrane protein purification.

Authors:  Teizo Asano; Mika K Kaneko; Yukinari Kato
Journal:  Biochem Biophys Rep       Date:  2020-07-17
  3 in total

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