Literature DB >> 32029278

Redefining PTB domain into independently functional dual cores.

Jun Zhang1, Akhil Padarti2, Xiaoting Jiang2, Johnathan Abou-Fadel2.   

Abstract

Current understanding of phosphotyrosine binding (PTB) domain is limited. Recently, we revealed a novel atypical phosphotyrosine binding (aPTB) domain in CCM2, making it a dual PTB domain-containing protein. Since aPTB domain is only 1/3 of the size of typical PTB domain, we explored the possibility to decrease the size of PTB domain and demonstrate that the typical PTB domain can be divided into two similarly structural and functional cores that can independently bind to NPXY motif. Further, we reduced each PTB core into a minimum core motif (mCore) which is the functional unit of PTB domains and structurally similar to the novel aPTB domain. Based on structural data, we developed several cis- and trans-inhibitors for NPXY binding scheme, with potential applications for therapeutic strategies in human health conditions.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Minimal PTB core motif; NPXY motifs; PTB core; Phosphotyrosine binding domain (PTB) and atypical PTB (aPTB) domains

Mesh:

Substances:

Year:  2020        PMID: 32029278      PMCID: PMC7301631          DOI: 10.1016/j.bbrc.2020.01.114

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  16 in total

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Journal:  Hum Mol Genet       Date:  2001-12-01       Impact factor: 6.150

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Authors:  Klaus Scheffzek; Stefan Welti
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3.  Structure of the split PH domain and distinct lipid-binding properties of the PH-PDZ supramodule of alpha-syntrophin.

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4.  The surprisingly flexible PTB domain.

Authors:  G Siegal
Journal:  Nat Struct Biol       Date:  1999-01

Review 5.  Phosphotyrosine-binding domains in signal transduction.

Authors:  Michael B Yaffe
Journal:  Nat Rev Mol Cell Biol       Date:  2002-03       Impact factor: 94.444

Review 6.  Structural and evolutionary division of phosphotyrosine binding (PTB) domains.

Authors:  Mark T Uhlik; Brenda Temple; Sompop Bencharit; Adam J Kimple; David P Siderovski; Gary L Johnson
Journal:  J Mol Biol       Date:  2005-01-07       Impact factor: 5.469

7.  Interaction between krit1 and malcavernin: implications for the pathogenesis of cerebral cavernous malformations.

Authors:  Jun Zhang; Daniele Rigamonti; Harry C Dietz; Richard E Clatterbuck
Journal:  Neurosurgery       Date:  2007-02       Impact factor: 4.654

8.  Evaluation of the template-based modeling in CASP12.

Authors:  Andriy Kryshtafovych; Bohdan Monastyrskyy; Krzysztof Fidelis; John Moult; Torsten Schwede; Anna Tramontano
Journal:  Proteins       Date:  2017-12-04

9.  Structural basis of the myosin X PH1(N)-PH2-PH1(C) tandem as a specific and acute cellular PI(3,4,5)P(3) sensor.

Authors:  Qing Lu; Jiang Yu; Jing Yan; Zhiyi Wei; Mingjie Zhang
Journal:  Mol Biol Cell       Date:  2011-09-30       Impact factor: 4.138

10.  Alternatively spliced isoforms reveal a novel type of PTB domain in CCM2 protein.

Authors:  Xiaoting Jiang; Akhil Padarti; Yanchun Qu; Shen Sheng; Johnathan Abou-Fadel; Ahmed Badr; Jun Zhang
Journal:  Sci Rep       Date:  2019-11-01       Impact factor: 4.379

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  1 in total

1.  In-silico analysis of nonsynonymous genomic variants within CCM2 gene reaffirm the existence of dual cores within typical PTB domain.

Authors:  Akhil Padarti; Ofek Belkin; Johnathan Abou-Fadel; Jun Zhang
Journal:  Biochem Biophys Rep       Date:  2022-01-27
  1 in total

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