| Literature DB >> 32022102 |
F C F Dionísio1,2, L S Oliveira1,2, M A Hernandes1, E E Engel1, R M Rangayyan3, P M Azevedo-Marques1, M H Nogueira-Barbosa1,2.
Abstract
The aims of this study were to evaluate the intra- and interobserver reproducibility of manual segmentation of bone sarcomas in magnetic resonance imaging (MRI) studies and to compare manual and semiautomatic segmentation methods. This retrospective study included twelve osteosarcoma and eight Ewing sarcoma MRI studies performed prior to any therapeutic intervention. All cases were histopathologically confirmed. Three radiologists used 3D-Slicer software to perform manual segmentation of bone sarcomas in a blinded and independent manner. One radiologist segmented manually and also performed semiautomatic segmentation with the GrowCut tool. Segmentation exercises were timed for comparison. The dice similarity coefficient (DSC) and Hausdorff distance (HD) were used to evaluate similarity between the segmentation results and further statistical analyses were performed to compare DSC, HD, and volumetric results. Manual segmentation was reproducible with intraobserver DSC varying from 0.83 to 0.97 and HD from 3.37 to 28.73 mm. Interobserver DSC of manual segmentation showed variation from 0.73 to 0.97 and HD from 3.93 to 33.40 mm. Semiautomatic segmentation compared to manual segmentation resulted in DSCs of 0.71-0.96 and HDs of 5.38-31.54 mm. Semiautomatic segmentation required significantly less time compared to manual segmentation (P value ≤0.05). Among all situations compared, tumor volumetry did not show significant statistical differences (P value >0.05). We found excellent intra- and interobserver agreement for manual segmentation of osteosarcoma and Ewing sarcoma. There was high similarity between manual and semiautomatic segmentation, with a significant reduction of segmentation time using the semiautomatic method.Entities:
Mesh:
Year: 2020 PMID: 32022102 PMCID: PMC6993358 DOI: 10.1590/1414-431X20198962
Source DB: PubMed Journal: Braz J Med Biol Res ISSN: 0100-879X Impact factor: 2.590
Figure 1Flowchart of study sample selection.
Distribution of cases according to gender, age, location, and histopathological result of the tumor.
| Case | Gender | Age (years) | Location in skeleton | Tumor |
|---|---|---|---|---|
| 1 | F | 8 | Right femur | Osteosarcoma |
| 2 | M | 35 | Left calcaneus | Osteosarcoma |
| 3 | M | 11 | Right tibia | Ewing sarcoma |
| 4 | M | 9 | Right fibula | Ewing sarcoma |
| 5 | M | 9 | Left iliac | Ewing sarcoma |
| 6 | M | 20 | Right femur | Osteosarcoma |
| 7 | M | 13 | Right femur | Osteosarcoma |
| 8 | F | 15 | Right ischiopubic ramus | Ewing sarcoma |
| 9 | M | 12 | Right femur | Osteosarcoma |
| 10 | F | 11 | Right femur | Osteosarcoma |
| 11 | M | 21 | Left iliac | Ewing sarcoma |
| 12 | M | 10 | Right humerus | Ewing sarcoma |
| 13 | F | 11 | Right fibula | Ewing sarcoma |
| 14 | M | 21 | Right femur | Osteosarcoma |
| 15 | F | 17 | Right humerus | Osteosarcoma |
| 16 | F | 20 | Right femur | Osteosarcoma |
| 17 | M | 16 | Left tibia | Osteosarcoma |
| 18 | M | 2 | Right ulna | Ewing sarcoma |
| 19 | M | 19 | Right radius | Osteosarcoma |
| 20 | M | 4 | Right femur | Osteosarcoma |
F: female; M: male.
Figure 2Slicer's GrowCut manual segmentation on axial plane using femoral osteosarcoma magnetic resonance imaging. A, T1 sequence image is on the left and T1 FS GD sequence image is on the right. Manual segmentation of the tumor in axial T1 FS GD images demarcated by yellow line. B, Same axial T1 FS GD image of (A), after marking the segmented area or “label” by the software (in green). T1WI: T1 weighting; T1WI FS GD: T1 weighting with fat suppression after intravenous administration of gadolinium.
Figure 33D-Slicer's GrowCut semiautomatic segmentation steps of a femoral osteosarcoma magnetic resonance imaging case. In the first column (A, B, and C), the T1WI sequence images are on the left and the T1WI FS GD sequence images are on the right. In the second (D, E, and F) and third columns (G and H), there are only T1WI FS GD sequence images. A, Yellow rectangular area of background tissue beyond the inferior margin of tumor. B and C, Area of interest from the tumor tissue within green mark and background tissue within yellow mark in the extremities of the tumor (B) and in the middle portion of the tumor on the longitudinal axis (C). D, E, and F, Segmented volume of interest within green mark after GrowCut tool processing in coronal (D), axial (E), and sagittal (F) planes. G and H, Manual editing of GrowCut tool excluding areas from the volume of interest (within green mark) that do not contain tumor tissue, as indicated with the blue arrow in (G), and including areas with tumor tissue in the volume of interest, as shown in area marked in red (H).
Dice similarity coefficient (DICE) and Hausdorff distance (HD) descriptive statistics for manual segmentation by Observer 1.
| Manual segmentation | Variables | |
|---|---|---|
| DICE | HD max (mm) | |
| First | ||
| Mean±SD | 0.91±0.03 | 11.74±6.41 |
| Median | 0.93 | 9.77 |
| CV (%) | 4.12 | 54.54 |
| Min;Max | (0.83; 0.97) | (3.37; 28.73) |
| 95%CI | (0.90; 0.93) | (8.74; 14.74) |
O1: observer 1; CV: coefficient of variation; CI: confidence interval.
Dice similarity coefficient (DICE) and Hausdorff distance (HD) descriptive statistics for comparison between results of manual and semiautomatic segmentation.
| Segmentation | Variables | |
|---|---|---|
| DICE | HD max (mm) | |
| Manual | ||
| Mean±SD | 0.88±0.05 | 12.46±4.95 |
| Median | 0.90 | 12.31 |
| CV (%) | 5.7 | 39.7 |
| Min;Max | (0.74; 0.96) | (5.38; 22.01) |
| 95%CI | (0.86; 0.90) | (10.14; 14.78) |
O1: observer 1; CV: coefficient of variation; CI: confidence interval.