| Literature DB >> 32021290 |
Jiabin Liu1, Rui-Xi Hua1,2, Yun Cheng3, Jinhong Zhu1,4, Jiao Zhang5, Jiwen Cheng6, Haixia Zhou7, Huimin Xia1, Jun Bian8, Jing He1.
Abstract
BACKGROUND: Neuroblastoma, mainly affecting children, is a lethal malignancy arising from the developing sympathetic nervous system. The genetic etiology of neuroblastoma remains mostly obscure. High mobility group AT-hook 2 (HMGA2), an oncogenic gene, is up-regulated in many tumors. Single nucleotide polymorphisms (SNPs) often modify cancer susceptibility. However, no studies are investigating the association between HMGA2 SNPs and neuroblastoma susceptibility.Entities:
Keywords: HMGA2; neuroblastoma; polymorphism; susceptibility
Year: 2020 PMID: 32021290 PMCID: PMC6970238 DOI: 10.2147/OTT.S229975
Source DB: PubMed Journal: Onco Targets Ther ISSN: 1178-6930 Impact factor: 4.147
Association Between HMGA2 Gene Polymorphisms and Neuroblastoma Risk
| Genotype | Cases (N=505) | Controls (N=1070) | Crude OR (95% CI) | Adjusted OR (95% CI)b | |||
|---|---|---|---|---|---|---|---|
| rs6581658 A>G (HWE=0.365) | |||||||
| AA | 319 (63.17) | 666 (62.24) | 1.00 | 1.00 | |||
| AG | 158 (31.29) | 350 (32.71) | 0.98 (0.80–1.21) | 0.860 | 0.98 (0.79–1.21) | 0.839 | |
| GG | 28 (5.54) | 54 (5.05) | 1.13 (0.71–1.80) | 0.615 | 1.12 (0.71–1.79) | 0.622 | |
| Additive | 0.893 | 0.99 (0.83–1.18) | 0.894 | 0.99 (0.83–1.18) | 0.899 | ||
| Dominant | 186 (36.83) | 404 (37.76) | 0.723 | 0.96 (0.77–1.20) | 0.724 | 0.96 (0.77–1.20) | 0.729 |
| Recessive | 477 (94.46) | 1016 (94.95) | 0.678 | 1.10 (0.69–1.77) | 0.678 | 1.11 (0.69–1.77) | 0.676 |
| rs8756 A>C (HWE=0.811) | |||||||
| AA | 425 (84.16) | 854 (79.81) | 1.00 | 1.00 | |||
| AC | 76 (15.05) | 203 (18.97) | 0.79 (0.60–1.05) | 0.100 | 0.79 (0.60–1.04) | 0.093 | |
| CC | 4 (0.79) | 13 (1.21) | 0.65 (0.21–2.00) | 0.454 | 0.64 (0.21–1.98) | 0.439 | |
| Additive | 0.038 | ||||||
| Dominant | 80 (15.84) | 216 (20.19) | 0.039 | ||||
| Recessive | 501 (99.21) | 1057 (98.79) | 0.448 | 0.65 (0.21–2.00) | 0.452 | 0.65 (0.21–1.99) | 0.447 |
| rs968697 T>C (HWE=0.780) | |||||||
| TT | 390 (77.23) | 799 (74.67) | 1.00 | 1.00 | |||
| TC | 107 (21.19) | 250 (23.36) | 0.92 (0.72–1.17) | 0.488 | 0.92 (0.72–1.17) | 0.474 | |
| CC | 8 (1.58) | 21 (1.96) | 0.82 (0.36–1.85) | 0.628 | 0.84 (0.37–1.90) | 0.666 | |
| Additive | 0.258 | 0.88 (0.70–1.10) | 0.259 | 0.88 (0.70–1.10) | 0.266 | ||
| Dominant | 115 (22.77) | 271 (25.33) | 0.271 | 0.87 (0.68–1.12) | 0.272 | 0.87 (0.68–1.12) | 0.276 |
| Recessive | 497 (98.42) | 1049 (98.04) | 0.602 | 0.80 (0.35–1.83) | 0.603 | 0.81 (0.36–1.85) | 0.622 |
| Combined effect of protective genotypesc | |||||||
| 0 | 14 (2.77) | 27 (2.52) | 1.00 | 1.00 | |||
| 1 | 320 (63.37) | 641 (59.91) | 0.96 (0.50–1.86) | 0.910 | 0.96 (0.50–1.86) | 0.901 | |
| 2 | 161 (31.88) | 344 (32.15) | 0.90 (0.46–1.77) | 0.765 | 0.90 (0.46–1.77) | 0.763 | |
| 3 | 10 (1.98) | 58 (5.42) | |||||
| 0–2 | 495 (98.02) | 1012 (94.58) | 1.00 | 1.00 | |||
| 3 | 10 (1.98) | 58 (5.42) | 0.002 |
Notes: The results were in bold, if the 95% CI excluded 1 or P<0.05. aχ2 test for genotype distributions between neuroblastoma patients and cancer-free controls. bAdjusted for age and gender. cRisk genotypes were rs6581658 AA/AG, rs8756 AC/CC and rs968697 TC/CC
Abbreviations: OR, odds ratio; CI, confidence interval; HWE, Hardy-Weinberg equilibrium.
Stratification Analysis for Association Between HMGA2 Gene Genotypes and Neuroblastoma Susceptibility
| Variables | rs8756 (Case/Control) | OR (95% CI) | AOR (95% CI)a | Protective Genotypes (Case/Control) | OR (95% CI) | AOR (95% CI)a | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | AC/CC | 0–2 | 3 | |||||||||
| Age, month | ||||||||||||
| ≤18 | 155/344 | 34/81 | 0.93 (0.60–1.45) | 0.754 | 0.94 (0.60–1.46) | 0.772 | 185/403 | 4/22 | 0.40 (0.14–1.17) | 0.093 | 0.40 (0.14–1.18) | 0.097 |
| >18 | 270/510 | 46/135 | 310/609 | 6/36 | ||||||||
| Gender | ||||||||||||
| Female | 176/366 | 37/82 | 0.94 (0.61–1.44) | 0.771 | 0.94 (0.61–1.44) | 0.767 | 206/423 | 7/25 | 0.58 (0.25–1.35) | 0.205 | 0.57 (0.24–1.35) | 0.202 |
| Male | 249/488 | 43/134 | 289/589 | 3/33 | ||||||||
| Sites of origin | ||||||||||||
| Adrenal gland | 145/854 | 28/216 | 0.76 (0.50–1.18) | 0.220 | 0.76 (0.49–1.17) | 0.206 | 170/1012 | 3/58 | ||||
| Retroperitoneal | 124/854 | 23/216 | 0.73 (0.46–1.17) | 0.196 | 0.73 (0.46–1.17) | 0.191 | 145/1012 | 2/58 | 0.24 (0.06–0.996) | 0.049 | 0.24 (0.06–1.01) | 0.052 |
| Mediastinum | 118/854 | 17/216 | 133/1012 | 2/58 | 0.26 (0.06–1.09) | 0.065 | 0.26 (0.06–1.08) | 0.063 | ||||
| Others | 32/854 | 10/216 | 1.24 (0.60–2.55) | 0.568 | 1.25 (0.60–2.58) | 0.554 | 41/1012 | 1/58 | 0.43 (0.06–3.15) | 0.403 | 0.43 (0.06–3.18) | 0.408 |
| Clinical stage | ||||||||||||
| I+II+4s | 208/854 | 42/216 | 0.80 (0.56–1.15) | 0.225 | 0.81 (0.56–1.16) | 0.248 | 246/1012 | 4/58 | ||||
| III+IV | 195/854 | 37/216 | 0.75 (0.51–1.10) | 0.140 | 0.74 (0.51–1.09) | 0.128 | 226/1012 | 6/58 | 0.46 (0.20–1.09) | 0.077 | 0.46 (0.20–1.09) | 0.077 |
Notes: The results were in bold, if the 95% CI excluded 1 or P<0.05. aAdjusted for age and gender, omitting the corresponding stratify factor.
Abbreviations: AOR, adjusted odds ratio; CI, confidence interval.
The Frequency of Inferred Haplotypes of HMGA2 Gene Based on Observed Genotypes and Their Association with the Neuroblastoma Susceptibility
| Haplotypesa | Cases (n=1010) | Controls (n=2140) | Crude OR (95% CI) | Adjusted ORb (95% CI) | ||
|---|---|---|---|---|---|---|
| GAT | 199 (19.70) | 416 (19.44) | 1.00 | 1.00 | ||
| GAC | 6 (0.59) | 12 (0.56) | 1.05 (0.39–2.84) | 0.923 | 1.06 (0.39–2.86) | 0.911 |
| GCT | 8 (0.79) | 28 (1.31) | 0.60 (0.27–1.34) | 0.213 | 0.60 (0.27–1.34) | 0.210 |
| GCC | 1 (0.10) | 2 (0.09) | 1.05 (0.10–11.65) | 0.968 | 1.07 (0.10–11.92) | 0.954 |
| AAT | 615 (60.89) | 1263 (59.02) | 1.02 (0.84–1.24) | 0.820 | 1.02 (0.84–1.24) | 0.824 |
| AAC | 106 (10.50) | 220 (10.28) | 1.01 (0.76–1.35) | 0.935 | 1.01 (0.76–1.35) | 0.927 |
| ACT | 65 (6.44) | 141 (6.59) | 0.97 (0.69–1.36) | 0.852 | 0.97 (0.69–1.36) | 0.849 |
| ACC | 10 (0.99) | 58 (2.71) |
Notes: The results were in bold, if the 95% CI excluded 1 or P<0.05. aThe haplotypes order were rs6581658, rs8756 and rs968697. bObtained in logistic regression models with adjustment for age and gender.
Abbreviations: OR, odds ratio; CI, confidence interval.