Literature DB >> 32015540

A myelin-related transcriptomic profile is shared by Pitt-Hopkins syndrome models and human autism spectrum disorder.

BaDoi N Phan1,2, Joseph F Bohlen1, Brittany A Davis1, Zengyou Ye1, Huei-Ying Chen1, Brent Mayfield1, Srinidhi Rao Sripathy1, Stephanie Cerceo Page1, Morganne N Campbell1, Hannah L Smith1, Danisha Gallop1, Hyojin Kim3,4, Courtney L Thaxton3,4, Jeremy M Simon3,5,6, Emily E Burke1, Joo Heon Shin1,7, Andrew J Kennedy8, J David Sweatt9, Benjamin D Philpot3,4,6, Andrew E Jaffe10,11,12,13,14,15, Brady J Maher16,17,18.   

Abstract

Autism spectrum disorder (ASD) is genetically heterogeneous with convergent symptomatology, suggesting common dysregulated pathways. In this study, we analyzed brain transcriptional changes in five mouse models of Pitt-Hopkins syndrome (PTHS), a syndromic form of ASD caused by mutations in the TCF4 gene, but not the TCF7L2 gene. Analyses of differentially expressed genes (DEGs) highlighted oligodendrocyte (OL) dysregulation, which we confirmed in two additional mouse models of syndromic ASD (Ptenm3m4/m3m4 and Mecp2tm1.1Bird). The PTHS mouse models showed cell-autonomous reductions in OL numbers and myelination, functionally confirming OL transcriptional signatures. We also integrated PTHS mouse model DEGs with human idiopathic ASD postmortem brain RNA-sequencing data and found significant enrichment of overlapping DEGs and common myelination-associated pathways. Notably, DEGs from syndromic ASD mouse models and reduced deconvoluted OL numbers distinguished human idiopathic ASD cases from controls across three postmortem brain data sets. These results implicate disruptions in OL biology as a cellular mechanism in ASD pathology.

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Year:  2020        PMID: 32015540      PMCID: PMC7065955          DOI: 10.1038/s41593-019-0578-x

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  70 in total

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Journal:  Science       Date:  2018-12-14       Impact factor: 47.728

3.  Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt.

Authors:  Steffen Durinck; Paul T Spellman; Ewan Birney; Wolfgang Huber
Journal:  Nat Protoc       Date:  2009-07-23       Impact factor: 13.491

4.  Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism.

Authors:  Neelroop N Parikshak; Rui Luo; Alice Zhang; Hyejung Won; Jennifer K Lowe; Vijayendran Chandran; Steve Horvath; Daniel H Geschwind
Journal:  Cell       Date:  2013-11-21       Impact factor: 41.582

5.  White-matter relaxation time and myelin water fraction differences in young adults with autism.

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6.  The contribution of de novo coding mutations to autism spectrum disorder.

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Journal:  Nature       Date:  2014-10-29       Impact factor: 69.504

7.  Proteomic analysis of post mortem brain tissue from autism patients: evidence for opposite changes in prefrontal cortex and cerebellum in synaptic connectivity-related proteins.

Authors:  Jantine Ac Broek; Paul C Guest; Hassan Rahmoune; Sabine Bahn
Journal:  Mol Autism       Date:  2014-07-30       Impact factor: 7.509

8.  Integrative Brain Transcriptome Analysis Reveals Region-Specific and Broad Molecular Changes in Shank3-Overexpressing Mice.

Authors:  Chunmei Jin; Hyojin Kang; Jae Ryun Ryu; Shinhyun Kim; Yinhua Zhang; Yeunkum Lee; Yoonhee Kim; Kihoon Han
Journal:  Front Mol Neurosci       Date:  2018-08-31       Impact factor: 5.639

9.  Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system.

Authors:  Sueli Marques; Amit Zeisel; Simone Codeluppi; David van Bruggen; Ana Mendanha Falcão; Lin Xiao; Huiliang Li; Martin Häring; Hannah Hochgerner; Roman A Romanov; Daniel Gyllborg; Ana Muñoz Manchado; Gioele La Manno; Peter Lönnerberg; Elisa M Floriddia; Fatemah Rezayee; Patrik Ernfors; Ernest Arenas; Jens Hjerling-Leffler; Tibor Harkany; William D Richardson; Sten Linnarsson; Gonçalo Castelo-Branco
Journal:  Science       Date:  2016-06-10       Impact factor: 47.728

10.  Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis.

Authors:  Andrew E Jaffe; Thomas Hyde; Joel Kleinman; Daniel R Weinbergern; Joshua G Chenoweth; Ronald D McKay; Jeffrey T Leek; Carlo Colantuoni
Journal:  BMC Bioinformatics       Date:  2015-11-06       Impact factor: 3.169

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  31 in total

Review 1.  Periods of synchronized myelin changes shape brain function and plasticity.

Authors:  Omar de Faria; Helena Pivonkova; Balazs Varga; Sebastian Timmler; Kimberley Anne Evans; Ragnhildur Thóra Káradóttir
Journal:  Nat Neurosci       Date:  2021-10-28       Impact factor: 24.884

Review 2.  PTEN mutations in autism spectrum disorder and congenital hydrocephalus: developmental pleiotropy and therapeutic targets.

Authors:  Tyrone DeSpenza; Marina Carlson; Shreyas Panchagnula; Stephanie Robert; Phan Q Duy; Nell Mermin-Bunnell; Benjamin C Reeves; Adam Kundishora; Aladine A Elsamadicy; Hannah Smith; Jack Ocken; Seth L Alper; Sheng Chih Jin; Ellen J Hoffman; Kristopher T Kahle
Journal:  Trends Neurosci       Date:  2021-10-05       Impact factor: 13.837

3.  Coherent Anti-Stokes Raman Spectroscopy (CARS) Application for Imaging Myelination in Brain Slices.

Authors:  Radu Moldovan; Achim Klug; Elizabeth A McCullagh; Shani Poleg; Dominik Stich
Journal:  J Vis Exp       Date:  2022-07-22       Impact factor: 1.424

Review 4.  Evaluation of Nav1.8 as a therapeutic target for Pitt Hopkins Syndrome.

Authors:  Keri Martinowich; Debamitra Das; Srinidhi Rao Sripathy; Yishan Mai; Rakaia F Kenney; Brady J Maher
Journal:  Mol Psychiatry       Date:  2022-10-12       Impact factor: 13.437

5.  Identification of a transcriptional signature found in multiple models of ASD and related disorders.

Authors:  Samuel Thudium; Katherine Palozola; Éloïse L'Her; Erica Korb
Journal:  Genome Res       Date:  2022-09-14       Impact factor: 9.438

6.  SHANK3 deficiency leads to myelin defects in the central and peripheral nervous system.

Authors:  Mariagiovanna Malara; Anne-Kathrin Lutz; Berra Incearap; Helen Friedericke Bauer; Silvia Cursano; Katrin Volbracht; Joanna Janina Lerner; Rakshita Pandey; Jan Philipp Delling; Valentin Ioannidis; Andrea Pérez Arévalo; Jaime Eugenin von Bernhardi; Michael Schön; Jürgen Bockmann; Leda Dimou; Tobias M Boeckers
Journal:  Cell Mol Life Sci       Date:  2022-06-20       Impact factor: 9.207

Review 7.  Myelin plasticity: sculpting circuits in learning and memory.

Authors:  Wendy Xin; Jonah R Chan
Journal:  Nat Rev Neurosci       Date:  2020-10-12       Impact factor: 34.870

8.  Modestly increasing systemic interleukin-6 perinatally disturbs secondary germinal zone neurogenesis and gliogenesis and produces sociability deficits.

Authors:  Fernando Janczur Velloso; Anna Wadhwa; Ekta Kumari; Ioana Carcea; Ozlem Gunal; Steven W Levison
Journal:  Brain Behav Immun       Date:  2021-12-23       Impact factor: 7.217

9.  De novo variants in TCF7L2 are associated with a syndromic neurodevelopmental disorder.

Authors:  Caroline Dias; Rolph Pfundt; Tjitske Kleefstra; Janneke Shuurs-Hoeijmakers; Elles M J Boon; Johanna M van Hagen; Petra Zwijnenburg; Marjan M Weiss; Boris Keren; Cyril Mignot; Arnaud Isapof; Karin Weiss; Tova Hershkovitz; Maria Iascone; Silvia Maitz; René G Feichtinger; Dieter Kotzot; Johannes A Mayr; Tawfeg Ben-Omran; Laila Mahmoud; Lynn S Pais; Christopher A Walsh; Vandana Shashi; Jennifer A Sullivan; Nicholas Stong; Francois Lecoquierre; Anne-Marie Guerrot; Aude Charollais; Lance H Rodan
Journal:  Am J Med Genet A       Date:  2021-05-18       Impact factor: 2.578

Review 10.  Molecular and Cellular Function of Transcription Factor 4 in Pitt-Hopkins Syndrome.

Authors:  Huei-Ying Chen; Joseph F Bohlen; Brady J Maher
Journal:  Dev Neurosci       Date:  2021-06-16       Impact factor: 3.421

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