Literature DB >> 32012004

Context-Aware Convolutional Neural Network for Grading of Colorectal Cancer Histology Images.

Muhammad Shaban, Ruqayya Awan, Muhammad Moazam Fraz, Ayesha Azam, Yee-Wah Tsang, David Snead, Nasir M Rajpoot.   

Abstract

Digital histology images are amenable to the application of convolutional neural networks (CNNs) for analysis due to the sheer size of pixel data present in them. CNNs are generally used for representation learning from small image patches (e.g. 224×224 ) extracted from digital histology images due to computational and memory constraints. However, this approach does not incorporate high-resolution contextual information in histology images. We propose a novel way to incorporate a larger context by a context-aware neural network based on images with a dimension of 1792×1792 pixels. The proposed framework first encodes the local representation of a histology image into high dimensional features then aggregates the features by considering their spatial organization to make a final prediction. We evaluated the proposed method on two colorectal cancer datasets for the task of cancer grading. Our method outperformed the traditional patch-based approaches, problem-specific methods, and existing context-based methods. We also presented a comprehensive analysis of different variants of the proposed method.

Entities:  

Mesh:

Year:  2020        PMID: 32012004     DOI: 10.1109/TMI.2020.2971006

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  9 in total

Review 1.  Artificial intelligence in histopathology: enhancing cancer research and clinical oncology.

Authors:  Artem Shmatko; Narmin Ghaffari Laleh; Moritz Gerstung; Jakob Nikolas Kather
Journal:  Nat Cancer       Date:  2022-09-22

2.  A Novel Hybrid Convolutional Neural Network Approach for the Stomach Intestinal Early Detection Cancer Subtype Classification.

Authors:  Md Ezaz Ahmed
Journal:  Comput Intell Neurosci       Date:  2022-06-24

Review 3.  Deep Learning on Histopathological Images for Colorectal Cancer Diagnosis: A Systematic Review.

Authors:  Athena Davri; Effrosyni Birbas; Theofilos Kanavos; Georgios Ntritsos; Nikolaos Giannakeas; Alexandros T Tzallas; Anna Batistatou
Journal:  Diagnostics (Basel)       Date:  2022-03-29

4.  Development and validation of a weakly supervised deep learning framework to predict the status of molecular pathways and key mutations in colorectal cancer from routine histology images: a retrospective study.

Authors:  Mohsin Bilal; Shan E Ahmed Raza; Ayesha Azam; Simon Graham; Mohammad Ilyas; Ian A Cree; David Snead; Fayyaz Minhas; Nasir M Rajpoot
Journal:  Lancet Digit Health       Date:  2021-10-19

5.  MixPatch: A New Method for Training Histopathology Image Classifiers.

Authors:  Youngjin Park; Mujin Kim; Murtaza Ashraf; Young Sin Ko; Mun Yong Yi
Journal:  Diagnostics (Basel)       Date:  2022-06-18

6.  Divide-and-Attention Network for HE-Stained Pathological Image Classification.

Authors:  Rui Yan; Zhidong Yang; Jintao Li; Chunhou Zheng; Fa Zhang
Journal:  Biology (Basel)       Date:  2022-06-29

7.  HCCANet: histopathological image grading of colorectal cancer using CNN based on multichannel fusion attention mechanism.

Authors:  Panyun Zhou; Yanzhen Cao; Min Li; Yuhua Ma; Chen Chen; Xiaojing Gan; Jianying Wu; Xiaoyi Lv; Cheng Chen
Journal:  Sci Rep       Date:  2022-09-06       Impact factor: 4.996

8.  Usability of deep learning and H&E images predict disease outcome-emerging tool to optimize clinical trials.

Authors:  Talha Qaiser; Ching-Yi Lee; Michel Vandenberghe; Joe Yeh; Marios A Gavrielides; Jason Hipp; Marietta Scott; Joachim Reischl
Journal:  NPJ Precis Oncol       Date:  2022-06-15

Review 9.  CAD systems for colorectal cancer from WSI are still not ready for clinical acceptance.

Authors:  Sara P Oliveira; Pedro C Neto; João Fraga; Diana Montezuma; Ana Monteiro; João Monteiro; Liliana Ribeiro; Sofia Gonçalves; Isabel M Pinto; Jaime S Cardoso
Journal:  Sci Rep       Date:  2021-07-13       Impact factor: 4.379

  9 in total

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