Literature DB >> 32010521

Reducing image variability across OCT devices with unsupervised unpaired learning for improved segmentation of retina.

David Romo-Bucheli1,2, Philipp Seeböck1,2, José Ignacio Orlando1, Bianca S Gerendas1, Sebastian M Waldstein1, Ursula Schmidt-Erfurth1, Hrvoje Bogunović1.   

Abstract

Diagnosis and treatment in ophthalmology depend on modern retinal imaging by optical coherence tomography (OCT). The recent staggering results of machine learning in medical imaging have inspired the development of automated segmentation methods to identify and quantify pathological features in OCT scans. These models need to be sensitive to image features defining patterns of interest, while remaining robust to differences in imaging protocols. A dominant factor for such image differences is the type of OCT acquisition device. In this paper, we analyze the ability of recently developed unsupervised unpaired image translations based on cycle consistency losses (cycleGANs) to deal with image variability across different OCT devices (Spectralis and Cirrus). This evaluation was performed on two clinically relevant segmentation tasks in retinal OCT imaging: fluid and photoreceptor layer segmentation. Additionally, a visual Turing test designed to assess the quality of the learned translation models was carried out by a group of 18 participants with different background expertise. Results show that the learned translation models improve the generalization ability of segmentation models to other OCT-vendors/domains not seen during training. Moreover, relationships between model hyper-parameters and the realism as well as the morphological consistency of the generated images could be identified.
© 2019 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Entities:  

Year:  2019        PMID: 32010521      PMCID: PMC6968770          DOI: 10.1364/BOE.379978

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  13 in total

1.  Fast Patch-Based Pseudo-CT Synthesis from T1-Weighted MR Images for PET/MR Attenuation Correction in Brain Studies.

Authors:  Angel Torrado-Carvajal; Joaquin L Herraiz; Eduardo Alcain; Antonio S Montemayor; Lina Garcia-Cañamaque; Juan A Hernandez-Tamames; Yves Rozenholc; Norberto Malpica
Journal:  J Nucl Med       Date:  2015-10-22       Impact factor: 10.057

2.  Optical coherence tomography.

Authors:  D Huang; E A Swanson; C P Lin; J S Schuman; W G Stinson; W Chang; M R Hee; T Flotte; K Gregory; C A Puliafito
Journal:  Science       Date:  1991-11-22       Impact factor: 47.728

3.  On the Effectiveness of Least Squares Generative Adversarial Networks.

Authors:  Xudong Mao; Qing Li; Haoran Xie; Raymond Y K Lau; Zhen Wang; Stephen Paul Smolley
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2018-09-24       Impact factor: 6.226

4.  Fully Automated Detection and Quantification of Macular Fluid in OCT Using Deep Learning.

Authors:  Thomas Schlegl; Sebastian M Waldstein; Hrvoje Bogunovic; Franz Endstraßer; Amir Sadeghipour; Ana-Maria Philip; Dominika Podkowinski; Bianca S Gerendas; Georg Langs; Ursula Schmidt-Erfurth
Journal:  Ophthalmology       Date:  2017-12-08       Impact factor: 12.079

5.  Stratified Sampling Voxel Classification for Segmentation of Intraretinal and Subretinal Fluid in Longitudinal Clinical OCT Data.

Authors:  Milan Sonka; Michael D Abramoff
Journal:  IEEE Trans Med Imaging       Date:  2015-03-06       Impact factor: 10.048

6.  Tumor-aware, Adversarial Domain Adaptation from CT to MRI for Lung Cancer Segmentation.

Authors:  Harini Veeraraghavan; Jue Jiang; Yu-Chi Hu; Neelam Tyagi; Pengpeng Zhang; Andreas Rimner; Gig S Mageras; Joseph O Deasy
Journal:  Med Image Comput Comput Assist Interv       Date:  2018-09

7.  First Clinical Application of Low-Cost OCT.

Authors:  Ge Song; Kengyeh K Chu; Sanghoon Kim; Michael Crose; Brian Cox; Evan T Jelly; J Niklas Ulrich; Adam Wax
Journal:  Transl Vis Sci Technol       Date:  2019-06-28       Impact factor: 3.283

Review 8.  The Development, Commercialization, and Impact of Optical Coherence Tomography.

Authors:  James Fujimoto; Eric Swanson
Journal:  Invest Ophthalmol Vis Sci       Date:  2016-07-01       Impact factor: 4.799

9.  Automated Retinal Layer Segmentation Using Spectral Domain Optical Coherence Tomography: Evaluation of Inter-Session Repeatability and Agreement between Devices.

Authors:  Louise Terry; Nicola Cassels; Kelly Lu; Jennifer H Acton; Tom H Margrain; Rachel V North; James Fergusson; Nick White; Ashley Wood
Journal:  PLoS One       Date:  2016-09-02       Impact factor: 3.240

10.  Clinically applicable deep learning for diagnosis and referral in retinal disease.

Authors:  Jeffrey De Fauw; Joseph R Ledsam; Bernardino Romera-Paredes; Stanislav Nikolov; Nenad Tomasev; Sam Blackwell; Harry Askham; Xavier Glorot; Brendan O'Donoghue; Daniel Visentin; George van den Driessche; Balaji Lakshminarayanan; Clemens Meyer; Faith Mackinder; Simon Bouton; Kareem Ayoub; Reena Chopra; Dominic King; Alan Karthikesalingam; Cían O Hughes; Rosalind Raine; Julian Hughes; Dawn A Sim; Catherine Egan; Adnan Tufail; Hugh Montgomery; Demis Hassabis; Geraint Rees; Trevor Back; Peng T Khaw; Mustafa Suleyman; Julien Cornebise; Pearse A Keane; Olaf Ronneberger
Journal:  Nat Med       Date:  2018-08-13       Impact factor: 53.440

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  3 in total

1.  Towards label-free 3D segmentation of optical coherence tomography images of the optic nerve head using deep learning.

Authors:  Sripad Krishna Devalla; Tan Hung Pham; Satish Kumar Panda; Liang Zhang; Giridhar Subramanian; Anirudh Swaminathan; Chin Zhi Yun; Mohan Rajan; Sujatha Mohan; Ramaswami Krishnadas; Vijayalakshmi Senthil; John Mark S De Leon; Tin A Tun; Ching-Yu Cheng; Leopold Schmetterer; Shamira Perera; Tin Aung; Alexandre H Thiéry; Michaël J A Girard
Journal:  Biomed Opt Express       Date:  2020-10-15       Impact factor: 3.732

2.  Depth-resolved visualization and automated quantification of hyperreflective foci on OCT scans using optical attenuation coefficients.

Authors:  Hao Zhou; Jeremy Liu; Rita Laiginhas; Qinqin Zhang; Yuxuan Cheng; Yi Zhang; Yingying Shi; Mengxi Shen; Giovanni Gregori; Philip J Rosenfeld; Ruikang K Wang
Journal:  Biomed Opt Express       Date:  2022-07-07       Impact factor: 3.562

3.  Self-Examination Low-Cost Full-Field Optical Coherence Tomography (SELFF-OCT) for neovascular age-related macular degeneration: a cross-sectional diagnostic accuracy study.

Authors:  Claus von der Burchard; Helge Sudkamp; Jan Tode; Cristoph Ehlken; Konstantine Purtskhvanidze; Moritz Moltmann; Britta Heimes; Peter Koch; Michael Münst; Malte Vom Endt; Timo Kepp; Dirk Theisen-Kunde; Inke König; Gereon Hüttmann; Johann Roider
Journal:  BMJ Open       Date:  2022-06-27       Impact factor: 3.006

  3 in total

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