Literature DB >> 32010510

Denoising Raman spectra by Wiener estimation with a numerical calibration dataset.

Yanru Bai1, Quan Liu1.   

Abstract

Most denoising methods that are currently used in the processing of Raman spectra require significant user interaction in order to optimize their performance across a range of signal-to-noise ratios. In this study, we proposed a method based on the principle of spectral integration followed by Wiener estimation using a numerical calibration dataset, which eliminates the need of experimental measurements for calibration as in the previous Wiener estimation based denoising method. The new method was tested on three types of samples, including a phantom sample, human fingernail and leukemia cells. Compared to two common denoising methods, i.e. moving-average filtering and Savitzky-Golay filtering, the performance of the proposed method is significantly less sensitive to the choices of parameters. Moreover, this method provides comparable or even better denoising performance in the cases with low signal-to-noise ratios.
© 2019 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Entities:  

Year:  2019        PMID: 32010510      PMCID: PMC6968752          DOI: 10.1364/BOE.11.000200

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  8 in total

1.  Spike removal and denoising of Raman spectra by wavelet transform methods.

Authors:  F Ehrentreich; L Sümmchen
Journal:  Anal Chem       Date:  2001-09-01       Impact factor: 6.986

2.  Automated method for subtraction of fluorescence from biological Raman spectra.

Authors:  Chad A Lieber; Anita Mahadevan-Jansen
Journal:  Appl Spectrosc       Date:  2003-11       Impact factor: 2.388

3.  Laser irradiation and Raman spectroscopy of single living cells and chromosomes: sample degradation occurs with 514.5 nm but not with 660 nm laser light.

Authors:  G J Puppels; J H Olminkhof; G M Segers-Nolten; C Otto; F F de Mul; J Greve
Journal:  Exp Cell Res       Date:  1991-08       Impact factor: 3.905

4.  Diagnosing breast cancer by using Raman spectroscopy.

Authors:  Abigail S Haka; Karen E Shafer-Peltier; Maryann Fitzmaurice; Joseph Crowe; Ramachandra R Dasari; Michael S Feld
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-22       Impact factor: 11.205

5.  Spectral characterization of a color scanner based on optimized adaptive estimation.

Authors:  Hui-Liang Shen; John H Xin
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2006-07       Impact factor: 2.129

6.  How to pre-process Raman spectra for reliable and stable models?

Authors:  Thomas Bocklitz; Angela Walter; Katharina Hartmann; Petra Rösch; Jürgen Popp
Journal:  Anal Chim Acta       Date:  2011-07-31       Impact factor: 6.558

7.  Recovery of Raman spectra with low signal-to-noise ratio using Wiener estimation.

Authors:  Shuo Chen; Xiaoqian Lin; Clement Yuen; Saraswathi Padmanabhan; Roger W Beuerman; Quan Liu
Journal:  Opt Express       Date:  2014-05-19       Impact factor: 3.894

8.  Comparison of principal component analysis and biochemical component analysis in Raman spectroscopy for the discrimination of apoptosis and necrosis in K562 leukemia cells.

Authors:  Yi Hong Ong; Mayasari Lim; Quan Liu
Journal:  Opt Express       Date:  2012-09-24       Impact factor: 3.894

  8 in total

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