Literature DB >> 32008144

Theoretical study on noncovalent interaction of molecular tweezers by Zn(II) salphen-azo-crown ether triads receptor.

Hui Li1, Xin Zheng1, Zishang Jia1, Xueye Wang2.   

Abstract

A novel zinc(II)-salphen-azo-benzo-15-crown-5 triad receptor was studied theoretically as ditopic recognition of hydrophobic amino acid. And density functional theory was used to investigate the Zn(II) salphen-crown ether complex (L1), complex L2 (L1 with the alkaline metal cation Na+), and the corresponding 1:1 sandwich complex (complex L with tryptophan). In this work, geometrical optimization was carried out using ωB97XD functional and def2-SVP basis set for all atoms. The absorption spectra and excited-states were calculated using time-dependent density functional theory and ωB97XD/def2-TZVP level. The absorption spectra data show some significantly shifts in the absorption band due to the present of Na+ or tryptophan. In addition, interfragment interactions between receptor L and tryptophan were analyzed in detail by Independent Gradient Model and topological properties of Bader's atoms in molecules theory, which is found to contribute to forming the metal-ligand bonds, intermolecular H-bond, and van der Waals interaction in 1:1 sandwich complex. The above results demonstrate that the L2 complex is a ditopic receptor to be utilized to recognize amphiphilic molecule - tryptophan.

Entities:  

Keywords:  Density functional theory; Molecular tweezers; Tryptophan; Zn(II) salphen-crown ether complex

Mesh:

Substances:

Year:  2020        PMID: 32008144     DOI: 10.1007/s00894-020-4301-3

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  34 in total

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Journal:  J Am Chem Soc       Date:  2011-09-29       Impact factor: 15.419

3.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

4.  Accurately extracting the signature of intermolecular interactions present in the NCI plot of the reduced density gradient versus electron density.

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Journal:  Phys Chem Chem Phys       Date:  2017-06-30       Impact factor: 3.676

5.  Ion pair receptors based on anion-π interaction.

Authors:  Yin Chen; De-Xian Wang; Zhi-Tang Huang; Mei-Xiang Wang
Journal:  Chem Commun (Camb)       Date:  2011-06-20       Impact factor: 6.222

6.  Cooperative self-assembly of a macrocyclic Schiff base complex.

Authors:  Giovanni Salassa; Ana M Castilla; Arjan W Kleij
Journal:  Dalton Trans       Date:  2011-04-01       Impact factor: 4.390

7.  Design, synthesis and evaluation of multifunctional salphen derivatives for the treatment of Alzheimer's disease.

Authors:  Neng Jiang; Su-Yi Li; Sai-Sai Xie; Zhong-Rui Li; Kelvin D G Wang; Xiao-Bing Wang; Ling-Yi Kong
Journal:  Eur J Med Chem       Date:  2014-10-02       Impact factor: 6.514

8.  Enhanced G-Quadruplex DNA Stabilization and Telomerase Inhibition by Novel Fluorescein Derived Salen and Salphen Based Ni(II) and Pd(II) Complexes.

Authors:  Asfa Ali; Mohini Kamra; Soma Roy; K Muniyappa; Santanu Bhattacharya
Journal:  Bioconjug Chem       Date:  2017-02-06       Impact factor: 4.774

9.  Role of CH/pi interactions in substrate binding by Escherichia coli beta-galactosidase.

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Journal:  Carbohydr Res       Date:  2004-09-13       Impact factor: 2.104

Review 10.  Pharmaceutical Applications of Molecular Tweezers, Clefts and Clips.

Authors:  Amira Mbarek; Ghina Moussa; Jeanne Leblond Chain
Journal:  Molecules       Date:  2019-05-09       Impact factor: 4.411

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  1 in total

1.  Effects of the Nature of the Metal Ion, Protein and Substrate on the Catalytic Center in Matrix Metalloproteinase-1: Insights from Multilevel MD, QM/MM and QM Studies.

Authors:  Ann Varghese; Shobhit S Chaturvedi; Bella DiCastri; Emerald Mehler; Gregg B Fields; Tatyana G Karabencheva-Christova
Journal:  Chemphyschem       Date:  2021-12-27       Impact factor: 3.520

  1 in total

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