Literature DB >> 32006784

The current structural glycome landscape and emerging technologies.

Liviu Copoiu1, Sony Malhotra2.   

Abstract

Carbohydrates represent one of the building blocks of life, along with nucleic acids, proteins and lipids. Although glycans are involved in a wide range of processes from embryogenesis to protein trafficking and pathogen infection, we are still a long way from deciphering the glycocode. In this review, we aim to present a few of the challenges that researchers working in the area of glycobiology can encounter and what strategies can be utilised to overcome them. Our goal is to paint a comprehensive picture of the current saccharide landscape available in the Protein Data Bank (PDB). We also review recently updated repositories relevant to the topic proposed, the impact of software development on strategies to structurally solve carbohydrate moieties, and state-of-the-art molecular and cellular biology methods that can shed some light on the function and structure of glycans.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID: 32006784     DOI: 10.1016/j.sbi.2019.12.020

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  5 in total

1.  Development and Evaluation of GlycanDock: A Protein-Glycoligand Docking Refinement Algorithm in Rosetta.

Authors:  Morgan L Nance; Jason W Labonte; Jared Adolf-Bryfogle; Jeffrey J Gray
Journal:  J Phys Chem B       Date:  2021-06-16       Impact factor: 2.991

2.  Comparison of Methods for Bulk Automated Simulation of Glycosidic Bond Conformations.

Authors:  Victor Stroylov; Maria Panova; Philip Toukach
Journal:  Int J Mol Sci       Date:  2020-10-15       Impact factor: 5.923

3.  Monoclonal Antibodies Generated against Glycoconjugates Recognize Chemical Linkers.

Authors:  Jessica Ramadhin; Vanessa Silva-Moraes; Thomas Norberg; Donald Harn
Journal:  Antibodies (Basel)       Date:  2020-09-15

4.  Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans.

Authors:  Philip V Toukach; Ksenia S Egorova
Journal:  Sci Data       Date:  2022-03-30       Impact factor: 6.444

Review 5.  Three-Dimensional Structures of Carbohydrates and Where to Find Them.

Authors:  Sofya I Scherbinina; Philip V Toukach
Journal:  Int J Mol Sci       Date:  2020-10-18       Impact factor: 5.923

  5 in total

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