Literature DB >> 32006411

CRISPR-Cas9 Genome Editing in Human Cell Lines with Donor Vector Made by Gibson Assembly.

Nirakar Sahoo1, Victoria Cuello1, Shreya Udawant1, Carl Litif1, Julie A Mustard1, Megan Keniry2.   

Abstract

CRISPR Cas9 genome editing allows researchers to modify genes in a multitude of ways including to obtain deletions, epitope-tagged loci, and knock-in mutations. Within 6 years of its initial application, CRISPR-Cas9 genome editing has been widely employed, but disadvantages to this method, such as low modification efficiencies and off-target effects, need careful consideration. Obtaining custom donor vectors can also be expensive and time-consuming. This chapter details strategies to overcome barriers to CRISPR-Cas9 genome editing as well as recent developments in employing this technique.

Entities:  

Keywords:  CRISPR; FOXO3; Gene editing; Gibson assembly

Year:  2020        PMID: 32006411      PMCID: PMC7391466          DOI: 10.1007/978-1-0716-0290-4_20

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  69 in total

1.  Comparative analysis of CRISPR loci in lactic acid bacteria genomes.

Authors:  Philippe Horvath; Anne-Claire Coûté-Monvoisin; Dennis A Romero; Patrick Boyaval; Christophe Fremaux; Rodolphe Barrangou
Journal:  Int J Food Microbiol       Date:  2008-07-16       Impact factor: 5.277

Review 2.  [Genome Editing with CRISPR/Cas9: First Steps Towards a new Era in Medicine?]

Authors:  Bernhard Schermer; Thomas Benzing
Journal:  Dtsch Med Wochenschr       Date:  2019-02-13       Impact factor: 0.628

Review 3.  The Anti-CRISPR Story: A Battle for Survival.

Authors:  Karen L Maxwell
Journal:  Mol Cell       Date:  2017-10-05       Impact factor: 17.970

Review 4.  Diversity, classification and evolution of CRISPR-Cas systems.

Authors:  Eugene V Koonin; Kira S Makarova; Feng Zhang
Journal:  Curr Opin Microbiol       Date:  2017-06-09       Impact factor: 7.934

Review 5.  Precision Control of CRISPR-Cas9 Using Small Molecules and Light.

Authors:  Soumyashree A Gangopadhyay; Kurt J Cox; Debasish Manna; Donghyun Lim; Basudeb Maji; Qingxuan Zhou; Amit Choudhary
Journal:  Biochemistry       Date:  2019-01-22       Impact factor: 3.162

6.  Native tandem and ion mobility mass spectrometry highlight structural and modular similarities in clustered-regularly-interspaced shot-palindromic-repeats (CRISPR)-associated protein complexes from Escherichia coli and Pseudomonas aeruginosa.

Authors:  Esther van Duijn; Ioana M Barbu; Arjan Barendregt; Matthijs M Jore; Blake Wiedenheft; Magnus Lundgren; Edze R Westra; Stan J J Brouns; Jennifer A Doudna; John van der Oost; Albert J R Heck
Journal:  Mol Cell Proteomics       Date:  2012-08-23       Impact factor: 5.911

7.  C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector.

Authors:  Omar O Abudayyeh; Jonathan S Gootenberg; Silvana Konermann; Julia Joung; Ian M Slaymaker; David B T Cox; Sergey Shmakov; Kira S Makarova; Ekaterina Semenova; Leonid Minakhin; Konstantin Severinov; Aviv Regev; Eric S Lander; Eugene V Koonin; Feng Zhang
Journal:  Science       Date:  2016-06-02       Impact factor: 47.728

8.  RNA targeting with CRISPR-Cas13.

Authors:  Omar O Abudayyeh; Jonathan S Gootenberg; Patrick Essletzbichler; Shuo Han; Julia Joung; Joseph J Belanto; Vanessa Verdine; David B T Cox; Max J Kellner; Aviv Regev; Eric S Lander; Daniel F Voytas; Alice Y Ting; Feng Zhang
Journal:  Nature       Date:  2017-10-04       Impact factor: 49.962

9.  CRISPR-Cas9(D10A) nickase-based genotypic and phenotypic screening to enhance genome editing.

Authors:  Ting-Wei Will Chiang; Carlos le Sage; Delphine Larrieu; Mukerrem Demir; Stephen P Jackson
Journal:  Sci Rep       Date:  2016-04-15       Impact factor: 4.379

10.  A protocol for custom CRISPR Cas9 donor vector construction to truncate genes in mammalian cells using pcDNA3 backbone.

Authors:  Neftali Vazquez; Lilia Sanchez; Rebecca Marks; Eduardo Martinez; Victor Fanniel; Alma Lopez; Andrea Salinas; Itzel Flores; Jesse Hirschmann; Robert Gilkerson; Erin Schuenzel; Robert Dearth; Reginald Halaby; Wendy Innis-Whitehouse; Megan Keniry
Journal:  BMC Mol Biol       Date:  2018-03-14       Impact factor: 2.946

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