Literature DB >> 32006315

Small-Angle Neutron Scattering of RNA-Protein Complexes.

Audrone Lapinaite1, Teresa Carlomagno2,3, Frank Gabel4.   

Abstract

Small-angle neutron scattering (SANS) provides structural information on biomacromolecules and their complexes in dilute solutions at the nanometer length scale. The overall dimensions, shapes, and interactions can be probed and compared to information obtained by complementary structural biology techniques such as crystallography, NMR, and EM. SANS, in combination with solvent H2O/D2O exchange and/or deuteration, is particularly well suited to probe the internal structure of RNA-protein (RNP) complexes since neutrons are more sensitive than X-rays to the difference in scattering length densities of proteins and RNA, with respect to an aqueous solvent. In this book chapter we provide a practical guide on how to carry out SANS experiments on RNP complexes, as well as possibilities of data analysis and interpretation.

Entities:  

Keywords:  Contrast variation; Deuterium labeling; Macromolecular complex; Protein; RNA; RNP; Small-angle neutron scattering (SANS); Structural biology

Year:  2020        PMID: 32006315     DOI: 10.1007/978-1-0716-0278-2_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

1.  Structural Information on Bacterial Amyloid and Amyloid-DNA Complex Obtained by Small-Angle Neutron or X-Ray Scattering.

Authors:  Tatsuhito Matsuo; Véronique Arluison; Frank Wien; Judith Peters
Journal:  Methods Mol Biol       Date:  2022

2.  An in vitro reconstituted U1 snRNP allows the study of the disordered regions of the particle and the interactions with proteins and ligands.

Authors:  Sébastien Campagne; Tebbe de Vries; Florian Malard; Pavel Afanasyev; Georg Dorn; Emil Dedic; Joachim Kohlbrecher; Daniel Boehringer; Antoine Cléry; Frédéric H-T Allain
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

Review 3.  Zooming in on protein-RNA interactions: a multi-level workflow to identify interaction partners.

Authors:  Alessio Colantoni; Jakob Rupert; Andrea Vandelli; Gian Gaetano Tartaglia; Elsa Zacco
Journal:  Biochem Soc Trans       Date:  2020-08-28       Impact factor: 5.407

Review 4.  Viewing SARS-CoV-2 Nucleocapsid Protein in Terms of Molecular Flexibility.

Authors:  Tatsuhito Matsuo
Journal:  Biology (Basel)       Date:  2021-05-21
  4 in total

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