| Literature DB >> 32004409 |
Mohamed H Shahin1, Sanchita Bhattacharya2,3, Diego Silva4,5, Sarah Kim6, Jackson Burton7, Jagdeep Podichetty7, Klaus Romero7, Daniela J Conrado8.
Abstract
Efforts for sharing individual clinical data are gaining momentum due to a heightened recognition that integrated data sets can catalyze biomedical discoveries and drug development. Among the benefits are the fact that data sharing can help generate and investigate new research hypothesis beyond those explored in the original study. Despite several accomplishments establishing public systems and guidance for data sharing in clinical trials, this practice is not the norm. Among the reasons are ethical challenges, such as privacy of individuals, data ownership, and control. This paper creates awareness of the potential benefits and challenges of sharing individual clinical data, how to overcome these challenges, and how as a clinical pharmacology community we can shape future directions in this field.Entities:
Year: 2020 PMID: 32004409 PMCID: PMC7359943 DOI: 10.1111/cts.12756
Source DB: PubMed Journal: Clin Transl Sci ISSN: 1752-8054 Impact factor: 4.689
Figure 1Benefits of clinical trial data sharing.
Figure 2Accomplishments of establishing public systems and guidance for data sharing in clinical trials. FDAAA, Food and Drug Administration Amendments Act; FDAMA, Food and Drug Administration Modernization Act; ICMJE, International Committee of Medical Journal Editors.
Examples of expanded data‐sharing initiatives (original source reference49
| Initiative | Focus area | Description | Outcomes | URL |
|---|---|---|---|---|
| ADNI | AD and MCI | A longitudinal study that aims to identify clinical, imaging, genetic, and biochemical biomarkers for the early detection and tracking of AD | 1,736 peer‐reviewed publications to date |
|
| AIBL | AD and MCI | A longitudinal study to determine which biomarkers, cognitive characteristics, and health and lifestyle factors determine subsequent development of symptomatic AD | 333 peer‐reviewed publications to date |
|
| CPAD Consortium | AD and MCI | CDISC standardized integrated clinical trial database of placebo arms in AD from 28 clinical trials contributed by industry partners | Alzheimer’s Disease Clinical Trial Simulation Tool endorsed by the FDA and the EMA, predementia clinical trial enrichment tool letter of support from the EMA |
|
| dbGaP | Interaction of genotypes and phenotypes for various diseases | Data‐sharing platform to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in humans | > 3,000 peer‐reviewed publications and abstracts |
|
| Enroll‐HD | HD | A worldwide observational study for HD families designed to accelerate the discovery and development of new therapeutics for HD | > 300 open and completed projects to accelerate HD research in disease progression, drug discovery, and preclinical/clinical research |
|
| ImmPort | Allergy, Autoimmune diseases, Infection responses, Transplantation, and Vaccine responses | An open‐access data repository of subject‐level human immunology data, with a commitment to promoting effective data sharing across the basic, clinical, and translational research communities | 391 studies including 116 clinical trials shared to date; 385 peer‐reviewed publications cited ImmPort for data sharing, tools, data reuse, and secondary analysis |
|
| MSOAC | MS | CDISC standardized integrated clinical trial database of placebo arms in MS from nine clinical trials contributed by industry partners | EMA draft qualification opinion on a test battery for MS |
|
| PPMI | PD | Observational clinical study to verify progression markers in PD | 131 peer‐reviewed publications to date |
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| PKD Consortium | PKD | CDISC standardized database consisting of de‐identified data from three longitudinal observational patient registries for PKD | Total kidney volume as a prognostic biomarker for PKD endorsed by the FDA and the EMA |
|
| PDS | Oncology | A digital library‐laboratory that provides one place where the research community can broadly share, integrate, and analyze historical, patient‐level data from academic and industry phase III cancer clinical trials | 150 peer‐reviewed publications to date |
|
| ReseqTB data platform | TB | A data platform that catalogs genotypic, phenotypic, and related metadata from mycobacterium TB strains to enable the development of clinically useful, WHO‐endorsed | 14 peer‐reviewed publications to date |
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| TB‐TB‐PACTS | TB | CDISC standardized integrated clinical trial database of placebo arms in TB from 17 phase III clinical phase | A comprehensive pooled analysis of data from the database guided an optimal clinical trial design by helping to quantify the types of patient populations needed for optimal treatment regimes |
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| WWARN | Malaria | A global platform that provides research evidence to support international efforts to fight antimalarial drug resistance | 123 peer‐reviewed publications to date |
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| National Cancer Institute GDC | Oncology | Data‐sharing platform that promotes sharing of genomic and clinical data between researchers to facilitate precision medicine in oncology | 95 peer‐reviewed publications to date |
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| TCIA | Oncology | An open‐access data repository of medical images for cancer patients to promote sharing of oncology clinical imaging data and advance our understanding of cancer |
> 750 peer‐reviewed publications to date |
|
AD, Alzheimer's Disease; ADNI, Alzheimer's Disease Neuroimaging Initiative; AIBL, Australian Imaging, Biomarker and Lifestyle Flagship Study of Ageing; CDISC, Clinical Data Interchange Standards Consortium; CPAD, Critical Path for Alzheimer's Disease; dbGaP, Database of Genotypes and Phenotypes; EMA, European Medicines Agency; FDA, US Food and Drug Administration; GDC, Genomic Data Commons; HD, Huntington’s disease; ImmPort, Immunology Database and Analysis Portal; MCI, mild cognitive impairment; MS, Multiple sclerosis; MSOAC, Multiple Sclerosis Outcome Assessments Consortium; PDS, Project Data Sphere; PKD, Polycystic Kidney Disease; PPMI, Parkinson’s Progression Markers Initiative; ReseqTB, Relational Sequencing TB Data Platform; TB, tuberculosis; TB‐PACTS, TB‐Platform for Aggregation of Clinical TB Studies; TCIA, The Cancer Imaging Archive; WHO, World Health Organization; WWARN, WorldWide Antimalarial Resistance Network.
Figure 3Stages for the creation of an integrated clinical database under an expanded data‐sharing approach (modified from22). NIH, National Institutes of Health.
List of drug development tools endorsed by the FDA with examples of data/knowledge sharing initiatives
| (Disease) Area | Endorsement | Data resource | Supporting information |
|---|---|---|---|
| Biomarker qualification | |||
| Nonclinical | Urinary biomarkers: Albumin, β2‐Microglobulin, Clusterin, Cystatin C, KIM‐1, Total Protein, and Trefoil factor‐3 | Short‐term rat GLP toxicology studies by Merck and Novartis | Guidance document: |
| Nephrotoxicity | Urinary nephrotoxicity biomarkers as assessed by immunoassays | Short term rat GLP toxicology studies conducted at AstraZeneca, Bayer, Biotrin, BMS, GSK, and Sanofi‐Aventis |
FDA review document:
|
| Cardiac troponins | Serum/plasma cardiotoxicity biomarkers as assessed by immunoassay | Data from 20 publications as critical to the qualification of troponins for use in the rat |
FDA review document:
|
| IS | Diagnostic biomarkers used with other clinical and host factors to identify patients with IS | The data to support qualification were obtained with the use of the Bio‐Rad Platelia Aspergillus enzyme immunoassay | FDA Guidance Document: |
| COPD | Prognostic biomarker used with other characteristics to enrich for COPD exacerbations | The COPD Biomarkers Qualification Consortium Database |
FDA Guidance Document:
|
| PKD | Total kidney volume as assessed by magnetic resonance imaging, computed tomography, and ultrasound | Three patient registries (University of Colorado‐Denver, Mayo Clinic, and Emory University) and two longitudinal cohort studies (CRISP1 and CRISP2 on the natural history of autosomal dominant PKD | FDA Guidance Document: |
| Nephrotoxicity | Urinary nephrotoxicity biomarker panel as assessed by immunoassays | Normal healthy volunteers | Qualification Determination Letter: |
| CHMI | Monitoring biomarker informs initiation of treatment with antimalarial drug following CHMI with P. falciparum sporozoites in healthy subjects in clinical studies for vaccine and/or drug development | Nonclinical and clinical data from multiple sources including the University of Washington |
Qualification Determination Letter:
|
| FFP initiative | |||
| AD | FFP Disease Progression Model: Placebo/Disease Progression | ADNI, and CPAD databases | Determination letter: |
| Multiple | FFP Statistical Method: MCP‐Mod | – | Determination letter: |
AD, Alzheimer’s disease; ADNI, AD Neuroimaging Initiative; CHMI, Controlled human malaria infection; COPD, chronic obstructive pulmonary disease; CPAD, Critical Path for Alzheimer's Disease; CRISP, Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease; FDA, US Food and Drug Administration; FFP, Fit‐for‐Purpose; GLP, Good Laboratory Practice; IS, invasive aspergillosis; MCP‐Mod, Multiple Comparison Procedure – Modeling; PKD, Polycystic Kidney Disease.