Literature DB >> 32003059

Profiles of immune infiltration in lung adenocarcinoma and their clinical significant: A gene-expression-based retrospective study.

Genwen Chen1, Zhongyi Dong2, Dehua Wu2, Yuhan Chen2.   

Abstract

Lung cancer is one of the fatal tumors. The tumor microenvironment plays a key role in regulating tumor progression. To figure out the role of tumor microenvironment in lung adenocarcinoma (LUAD), ESTIMATE algorithm was used to evaluate the immune scores in LUAD. Patients with low immune scores had a worse overall survival (OS) compared with high immune scores. Using RNA-Seq data of 489 patients in The Cancer Genome Atlas (TCGA), differentially expressed genes (DEGs) were identified between high- and low-immune score groups. Based on the DEGs, nine-gene signature was constructed by the least absolute shrinkage and selection operator Cox regression model in TCGA set. The signature demonstrated significant prognostic value in both TCGA and Gene Expression Omnibus database. Multivariate Cox regression analyses indicated that nine-genes signature was an independent prognostic factor. Subgroup analysis also revealed a robust prognostic ability of nine-gene signature. A nomogram with a C-index of 0.722 had a favorable power for predicting 3-, 5-, and 10-year survival for clinical use by integrating nine-gene signature and other clinical features. Co-expression and functional enrichment analysis showed that nine-gene signature was significantly associated with immune response and provided potential profound molecules for revealing the mechanism of tumor initiation and progression. In conclusion, we revealed the significance of immune infiltration and built a novel nine-gene signature as a reliable prognostic factor for patients with LUAD.
© 2020 Wiley Periodicals, Inc.

Entities:  

Keywords:  gene signature; immune; lung adenocarcinoma; tumor microenvironment

Mesh:

Substances:

Year:  2020        PMID: 32003059     DOI: 10.1002/jcb.29667

Source DB:  PubMed          Journal:  J Cell Biochem        ISSN: 0730-2312            Impact factor:   4.429


  3 in total

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Authors:  Baoying Yuan; Feifei Li; Youbao Li; Yuhan Chen
Journal:  Cancer Manag Res       Date:  2020-05-27       Impact factor: 3.989

2.  Tumor microenvironment related novel signature predict lung adenocarcinoma survival.

Authors:  Juan Chen; Rui Zhou
Journal:  PeerJ       Date:  2021-01-14       Impact factor: 2.984

3.  Integrative Modeling of Multiomics Data for Predicting Tumor Mutation Burden in Patients with Lung Cancer.

Authors:  Jun Wang; Peng Chen; Mingyang Su; Guocheng Zhong; Shasha Zhang; Deming Gou
Journal:  Biomed Res Int       Date:  2022-01-20       Impact factor: 3.411

  3 in total

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