| Literature DB >> 32001309 |
Julian W Tang1, Paul A Tambyah2, David S C Hui3.
Abstract
Entities:
Mesh:
Year: 2020 PMID: 32001309 PMCID: PMC7127306 DOI: 10.1016/j.jinf.2020.01.014
Source DB: PubMed Journal: J Infect ISSN: 0163-4453 Impact factor: 6.072
Fig. 1A maximum likelihood tree using full genome coronavirus sequences (30–40 kbp in length) from GenBank was constructed using Fast Tree (v2.1) under a GTR model of evolution. Initial alignment was performed using the online multiple alignment program (MAFFT v.7: https://mafft.cbrc.jp/alignment/server/) with further manual editing. The final tree was displayed and annotated in FigTree v1.4.4. Large groups of similar sequences belong to HCoV OC43, HKU1, NL63, 229E ad SARS CoV have been collapsed for clarity. Figures on the branches are Shimodaira-Hasegawa-like support values, ranging from 0 to 1, with higher values indicating that the branch topologies (or ‘splits’) are more likely to be real. The Wuhan 2019-nCoV (GenBank Accession no. MN908947) is shown in red along with its closest relative bat SARS-like CoVs.