Literature DB >> 31999931

Alteration of Exon Definition Causes Amelogenesis Imperfecta.

Y J Kim1, J Kang2, F Seymen3, M Koruyucu3, H Zhang4, Y Kasimoglu3, M Bayram5, E B Tuna-Ince3, S Bayrak6, N Tuloglu6, J C-C Hu4, J P Simmer4, J-W Kim1,2.   

Abstract

Amelogenesis imperfecta (AI) is a collection of genetic disorders affecting the quality and/or quantity of tooth enamel. More than 20 genes are, so far, known to be responsible for this condition. In this study, we recruited 3 Turkish families with hypomaturation AI. Whole-exome sequence analyses identified disease-causing mutations in each proband, and these mutations cosegregated with the AI phenotype in all recruited members of each family. The AI-causing mutations in family 1 were a novel AMELX mutation [NM_182680.1:c.143T>C, p.(Leu48Ser)] in the proband and a novel homozygous MMP20 mutation [NM_004771.3:c.616G>A, p.(Asp206Asn)] in the mother of the proband. Previously reported compound heterozygous MMP20 mutations [NM_004771.3:c.103A>C, p.(Arg35=) and c.389C>T, p.(Thr130Ile)] caused the AI in family 2 and family 3. Minigene splicing analyses revealed that the AMELX missense mutation increased exonic definition of exon 4 and the MMP20 synonymous mutation decreased exonic definition of exon 1. These mutations would trigger an alteration of exon usage during RNA splicing, causing the enamel malformations. These results broaden our understanding of molecular genetic pathology of tooth enamel formation.

Entities:  

Keywords:  AMELX; MMP20; enamel; exon skipping; silent mutation; tooth

Mesh:

Year:  2020        PMID: 31999931      PMCID: PMC7088207          DOI: 10.1177/0022034520901708

Source DB:  PubMed          Journal:  J Dent Res        ISSN: 0022-0345            Impact factor:   6.116


  39 in total

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Journal:  Bioinformatics       Date:  2011-09-08       Impact factor: 6.937

Review 2.  Mechanisms and Regulation of Alternative Pre-mRNA Splicing.

Authors:  Yeon Lee; Donald C Rio
Journal:  Annu Rev Biochem       Date:  2015-03-12       Impact factor: 23.643

3.  From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.

Authors:  Geraldine A Van der Auwera; Mauricio O Carneiro; Christopher Hartl; Ryan Poplin; Guillermo Del Angel; Ami Levy-Moonshine; Tadeusz Jordan; Khalid Shakir; David Roazen; Joel Thibault; Eric Banks; Kiran V Garimella; David Altshuler; Stacey Gabriel; Mark A DePristo
Journal:  Curr Protoc Bioinformatics       Date:  2013

4.  Novel MMP20 and KLK4 Mutations in Amelogenesis Imperfecta.

Authors:  F Seymen; J-C Park; K-E Lee; H-K Lee; D-S Lee; M Koruyucu; K Gencay; M Bayram; E B Tuna; Z H Lee; Y-J Kim; J-W Kim
Journal:  J Dent Res       Date:  2015-06-29       Impact factor: 6.116

5.  The human enamel protein gene amelogenin is expressed from both the X and the Y chromosomes.

Authors:  E C Salido; P H Yen; K Koprivnikar; L C Yu; L J Shapiro
Journal:  Am J Hum Genet       Date:  1992-02       Impact factor: 11.025

6.  Fate of the mammalian cranial neural crest during tooth and mandibular morphogenesis.

Authors:  Y Chai; X Jiang; Y Ito; P Bringas; J Han; D H Rowitch; P Soriano; A P McMahon; H M Sucov
Journal:  Development       Date:  2000-04       Impact factor: 6.868

7.  SIFT web server: predicting effects of amino acid substitutions on proteins.

Authors:  Ngak-Leng Sim; Prateek Kumar; Jing Hu; Steven Henikoff; Georg Schneider; Pauline C Ng
Journal:  Nucleic Acids Res       Date:  2012-06-11       Impact factor: 16.971

8.  Mutations in RELT cause autosomal recessive amelogenesis imperfecta.

Authors:  Jung-Wook Kim; Hong Zhang; Figen Seymen; Mine Koruyucu; Yuanyuan Hu; Jenny Kang; Youn J Kim; Atsushi Ikeda; Yelda Kasimoglu; Merve Bayram; Chuhua Zhang; Kazuhiko Kawasaki; John D Bartlett; Thomas L Saunders; James P Simmer; Jan C-C Hu
Journal:  Clin Genet       Date:  2018-12-21       Impact factor: 4.438

9.  MMP20, KLK4, and MMP20/KLK4 double null mice define roles for matrix proteases during dental enamel formation.

Authors:  Yuanyuan Hu; Charles E Smith; Amelia S Richardson; John D Bartlett; Jan C C Hu; James P Simmer
Journal:  Mol Genet Genomic Med       Date:  2015-12-20       Impact factor: 2.183

Review 10.  Review of research on the mechanical properties of the human tooth.

Authors:  Ya-Rong Zhang; Wen Du; Xue-Dong Zhou; Hai-Yang Yu
Journal:  Int J Oral Sci       Date:  2014-06       Impact factor: 6.344

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  6 in total

1.  Recessive Mutations in ACP4 Cause Amelogenesis Imperfecta.

Authors:  Y J Kim; Y Lee; Y Kasimoglu; F Seymen; J P Simmer; J C-C Hu; E-S Cho; J-W Kim
Journal:  J Dent Res       Date:  2021-05-26       Impact factor: 6.116

2.  Translational Attenuation by an Intron Retention in the 5' UTR of ENAM Causes Amelogenesis Imperfecta.

Authors:  Youn Jung Kim; Yejin Lee; Hong Zhang; John Timothy Wright; James P Simmer; Jan C-C Hu; Jung-Wook Kim
Journal:  Biomedicines       Date:  2021-04-22

3.  A Novel De Novo SP6 Mutation Causes Severe Hypoplastic Amelogenesis Imperfecta

Authors:  Youn Jung Kim; Yejin Lee; Hong Zhang; Ji-Soo Song; Jan C-C Hu; James P Simmer; Jung-Wook Kim
Journal:  Genes (Basel)       Date:  2021-02-26       Impact factor: 4.096

4.  An Intron c.103-3T>C Variant of the AMELX Gene Causes Combined Hypomineralized and Hypoplastic Type of Amelogenesis Imperfecta: Case Series and Review of the Literature.

Authors:  Tina Leban; Katarina Trebušak Podkrajšek; Jernej Kovač; Aleš Fidler; Alenka Pavlič
Journal:  Genes (Basel)       Date:  2022-07-18       Impact factor: 4.141

5.  When a Synonymous Variant Is Nonsynonymous.

Authors:  Mauno Vihinen
Journal:  Genes (Basel)       Date:  2022-08-19       Impact factor: 4.141

6.  A Recurrent FAM83H Mutation in an Extended Colombian Family and Variable Craniofacial Phenotypes.

Authors:  Camila Alvarez; María Andrea Aragón; Yejin Lee; Sandra Gutiérrez; Patricia Méndez; Dabeiba Adriana García; Liliana Otero; Jung-Wook Kim
Journal:  Children (Basel)       Date:  2022-03-04
  6 in total

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