Literature DB >> 31996076

Molecular dynamics simulations reveal how the reticulon-homology domain of the autophagy receptor RETREG1/FAM134B remodels membranes for efficient selective reticulophagy.

Hana Popelka1, Daniel J Klionsky1.   

Abstract

The autophagy receptor for selective reticulophagy, RETREG1/FAM134B is essential for ER maintenance, and its dysfunction is associated with neuronal disorders, vascular dementia, or viral infections. The protein consists of the reticulon-homology domain (RHD) that is flanked at the N- and C-termini by an intrinsically disordered protein region (IDPR), where the C terminal IDPR carries the indispensable LC3-interacting region (LIR) motif for the interaction with LC3. The RHD of RETREG1 is presumed to play a role in membrane remodeling, but the absence of a known 3D structure of this domain so far prevented researchers from gaining mechanistic insights into how the RETREG1 RHD curves membranes, and thereby facilities reticulophagy. The recent study by Bhaskara et al., which is described in this editor's corner article, used molecular dynamics (MD) simulations to create a structural model of the RETREG1 RHD. MD simulations along with in vitro liposome remodeling experiments reveal how the RHD domain acts on the ER membrane and, in concert with the C terminal IDPR, executes the function of RETREG1 in selective reticulophagy.Abbreviations: ER, endoplasmic reticulum; IDPR, intrinsically disordered protein region; LIR, LC3-interacting region; MD, molecular dynamics; RHD, reticulon-homology domain; TM, transmembrane.

Entities:  

Keywords:  Endoplasmic reticulum; lysosome; protein intrinsic disorder; receptor; selective autophagy; stress

Mesh:

Substances:

Year:  2020        PMID: 31996076      PMCID: PMC7138225          DOI: 10.1080/15548627.2020.1719725

Source DB:  PubMed          Journal:  Autophagy        ISSN: 1554-8627            Impact factor:   16.016


  9 in total

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Authors:  Weiliang Fan; Ashley Nassiri; Qing Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-25       Impact factor: 11.205

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Journal:  Nature       Date:  2015-06-03       Impact factor: 49.962

4.  Dengue and Zika viruses subvert reticulophagy by NS2B3-mediated cleavage of FAM134B.

Authors:  Nicholas J Lennemann; Carolyn B Coyne
Journal:  Autophagy       Date:  2017-01-19       Impact factor: 16.016

5.  Mutations in FAM134B, encoding a newly identified Golgi protein, cause severe sensory and autonomic neuropathy.

Authors:  Ingo Kurth; Torsten Pamminger; J Christopher Hennings; Désirée Soehendra; Antje K Huebner; Annelies Rotthier; Jonathan Baets; Jan Senderek; Haluk Topaloglu; Sandra A Farrell; Gudrun Nürnberg; Peter Nürnberg; Peter De Jonghe; Andreas Gal; Christoph Kaether; Vincent Timmerman; Christian A Hübner
Journal:  Nat Genet       Date:  2009-10-18       Impact factor: 38.330

6.  The Atg2-Atg18 complex tethers pre-autophagosomal membranes to the endoplasmic reticulum for autophagosome formation.

Authors:  Tetsuya Kotani; Hiromi Kirisako; Michiko Koizumi; Yoshinori Ohsumi; Hitoshi Nakatogawa
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-25       Impact factor: 11.205

7.  Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy.

Authors:  Ramachandra M Bhaskara; Paolo Grumati; Javier Garcia-Pardo; Sissy Kalayil; Adriana Covarrubias-Pinto; Wenbo Chen; Mikhail Kudryashev; Ivan Dikic; Gerhard Hummer
Journal:  Nat Commun       Date:  2019-05-30       Impact factor: 14.919

8.  The Phyre2 web portal for protein modeling, prediction and analysis.

Authors:  Lawrence A Kelley; Stefans Mezulis; Christopher M Yates; Mark N Wass; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2015-05-07       Impact factor: 13.491

9.  Lipidation of the LC3/GABARAP family of autophagy proteins relies on a membrane-curvature-sensing domain in Atg3.

Authors:  Sangeeta Nath; Julia Dancourt; Vladimir Shteyn; Gabriella Puente; Wendy M Fong; Shanta Nag; Joerg Bewersdorf; Ai Yamamoto; Bruno Antonny; Thomas J Melia
Journal:  Nat Cell Biol       Date:  2014-04-20       Impact factor: 28.824

  9 in total
  3 in total

Review 1.  Theater in the Self-Cleaning Cell: Intrinsically Disordered Proteins or Protein Regions Acting with Membranes in Autophagy.

Authors:  Hana Popelka; Vladimir N Uversky
Journal:  Membranes (Basel)       Date:  2022-04-24

2.  Sunitinib treatment promotes metastasis of drug-resistant renal cell carcinoma via TFE3 signaling pathway.

Authors:  Luchao Li; Shuo Zhao; Zhengfang Liu; Nianzhao Zhang; Shuo Pang; Jikai Liu; Cheng Liu; Yidong Fan
Journal:  Cell Death Dis       Date:  2021-02-26       Impact factor: 8.469

Review 3.  Critical roles of FAM134B in ER-phagy and diseases.

Authors:  Jie Mo; Jin Chen; Bixiang Zhang
Journal:  Cell Death Dis       Date:  2020-11-16       Impact factor: 8.469

  3 in total

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