Literature DB >> 3199443

Electrostatic effects of charge perturbations introduced by metal oxidation in proteins. A theoretical analysis.

D Bashford1, M Karplus, G W Canters.   

Abstract

A macroscopic dielectric model for the interactions between charges in proteins is used to calculate the changes in His residue pKa values induced in azurin by oxidation of the copper. The calculated results agree with nuclear magnetic resonance experiments to within the uncertainty associated with the measurements. It is found that a large apparent dielectric constant can describe the interaction between two protein groups, even if the shortest path between them is through the protein, which is assumed to have a low dielectric constant.

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Year:  1988        PMID: 3199443     DOI: 10.1016/0022-2836(88)90016-2

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  5 in total

1.  A critical investigation of the Tanford-Kirkwood scheme by means of Monte Carlo simulations.

Authors:  F L Da Silva; B Jönsson; R Penfold
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

2.  Computation of affinity and selectivity: binding of 2,4-diaminopteridine and 2,4-diaminoquinazoline inhibitors to dihydrofolate reductases.

Authors:  J Marelius; M Graffner-Nordberg; T Hansson; A Hallberg; J Aqvist
Journal:  J Comput Aided Mol Des       Date:  1998-03       Impact factor: 3.686

3.  Calculation of electron transfer reorganization energies using the finite difference Poisson-Boltzmann model.

Authors:  K A Sharp
Journal:  Biophys J       Date:  1998-03       Impact factor: 4.033

Review 4.  Development of constant-pH simulation methods in implicit solvent and applications in biomolecular systems.

Authors:  Fernando Luís Barroso daSilva; Luis Gustavo Dias
Journal:  Biophys Rev       Date:  2017-09-18

5.  Simulation of electron-proton coupling with a Monte Carlo method: application to cytochrome c3 using continuum electrostatics.

Authors:  A M Baptista; P J Martel; C M Soares
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

  5 in total

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