Literature DB >> 31988837

Exploring genetic targets of psoriasis using genome wide association studies (GWAS) for drug repurposing.

Harshit Nanda1, Nirmaladevi Ponnusamy1, Rajasree Odumpatta1, Jeyaraman Jeyakanthan2, Arumugam Mohanapriya1.   

Abstract

Psoriasis is a chronic inflammatory disease causing itching in the body and pain in the joints. Currently, no permanent cure is available at a commercial level for this disease. Genome wide association studies (GWAS) provide a deeper insight that helps in better understanding this disease and further possible cure of this disease. The major goal of the present study is to identify potent genetic targets of psoriasis disease using GWAS approach and identify drugs for repurposing. The methods used include GWAS catalogue, GeneAnalytics, canSAR protein annotation tool, VarElect, Drug bank, Proteomics database, ProTox software. By exploring GWAS catalogue, 126 psoriasis associated genes (PAG) were identified. 68 genes found to be druggable were obtained from canSAR protein annotation tool. Localization results depict that maximum genes are present in cytoplasmic cellular components. The superpathways obtained from GeneAnalytics resulted in involvement of these genes in the immune system, Jak/Stat pathway, Th17 and Wnt pathways. Two genes Interleukin 13 (IL13) and POLI are Food and Drug Administration (FDA) approved targets. Small compounds for these targets were analysed for drug-likeliness, toxicity and mutagenecity properties. The FDA approved drug pandel was found to possess desirable properties. The medications used for psoriasis causes mild to severe side effects and does not work well always. Hence we propose drug repurposing strategy to use existing drugs for new therapies. Therefore, the drug pandel could be explored further and repurposed to treat psoriasis. © King Abdulaziz City for Science and Technology 2020.

Entities:  

Keywords:  Chronic disease; Gene ontology; Mutagenicity; Pathways; Toxicity

Year:  2020        PMID: 31988837      PMCID: PMC6954159          DOI: 10.1007/s13205-019-2038-4

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  46 in total

1.  The physical, psychological and social impact of psoriasis.

Authors:  S R Rapp; M L Exum; D M Reboussin; S R Feldman; A Fleischer; A Clark
Journal:  J Health Psychol       Date:  1997-10

2.  Epidemiology of psoriatic arthritis in the population of the United States.

Authors:  Joel M Gelfand; Dafna D Gladman; Philip J Mease; Nana Smith; David J Margolis; Tamar Nijsten; Robert S Stern; Steven R Feldman; Tara Rolstad
Journal:  J Am Acad Dermatol       Date:  2005-10       Impact factor: 11.527

3.  Integrating GWAS and Co-expression Network Data Identifies Bone Mineral Density Genes SPTBN1 and MARK3 and an Osteoblast Functional Module.

Authors:  Gina M Calabrese; Larry D Mesner; Joseph P Stains; Steven M Tommasini; Mark C Horowitz; Clifford J Rosen; Charles R Farber
Journal:  Cell Syst       Date:  2016-11-17       Impact factor: 10.304

Review 4.  Pleiotropy in complex traits: challenges and strategies.

Authors:  Nadia Solovieff; Chris Cotsapas; Phil H Lee; Shaun M Purcell; Jordan W Smoller
Journal:  Nat Rev Genet       Date:  2013-06-11       Impact factor: 53.242

Review 5.  Psoriasis and comorbid diseases: Implications for management.

Authors:  Junko Takeshita; Sungat Grewal; Sinéad M Langan; Nehal N Mehta; Alexis Ogdie; Abby S Van Voorhees; Joel M Gelfand
Journal:  J Am Acad Dermatol       Date:  2017-03       Impact factor: 11.527

6.  canSAR: an integrated cancer public translational research and drug discovery resource.

Authors:  Mark D Halling-Brown; Krishna C Bulusu; Mishal Patel; Joe E Tym; Bissan Al-Lazikani
Journal:  Nucleic Acids Res       Date:  2011-10-19       Impact factor: 16.971

7.  Comparison of health-related quality of life in rheumatoid arthritis, psoriatic arthritis and psoriasis and effects of etanercept treatment.

Authors:  Vibeke Strand; Veronika Sharp; Andrew S Koenig; Grace Park; Yifei Shi; Brian Wang; Debra J Zack; David Fiorentino
Journal:  Ann Rheum Dis       Date:  2012-01-17       Impact factor: 19.103

Review 8.  Concepts of pathogenesis in psoriatic arthritis: genotype determines clinical phenotype.

Authors:  Oliver FitzGerald; Muhammad Haroon; Jon T Giles; Robert Winchester
Journal:  Arthritis Res Ther       Date:  2015-05-07       Impact factor: 5.156

9.  VarElect: the phenotype-based variation prioritizer of the GeneCards Suite.

Authors:  Gil Stelzer; Inbar Plaschkes; Danit Oz-Levi; Anna Alkelai; Tsviya Olender; Shahar Zimmerman; Michal Twik; Frida Belinky; Simon Fishilevich; Ron Nudel; Yaron Guan-Golan; David Warshawsky; Dvir Dahary; Asher Kohn; Yaron Mazor; Sergey Kaplan; Tsippi Iny Stein; Hagit N Baris; Noa Rappaport; Marilyn Safran; Doron Lancet
Journal:  BMC Genomics       Date:  2016-06-23       Impact factor: 3.969

Review 10.  Update on biologic safety for patients with psoriasis during pregnancy.

Authors:  Martina L Porter; Stephen J Lockwood; Alexa B Kimball
Journal:  Int J Womens Dermatol       Date:  2017-02-04
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Authors:  Amal Ahmed Mohamed; Eman Elhussain; Naglaa Fawzy; Yasser Sakr; Marwa Salah El-Dien; Abbas Mohammed Abbas; Maha S Hussein; Nourelhuda Nassar; Omnia Ezzat; Reham Yousry El-Amir; Sarah Ibrahim; Nermeen Ibrahim Bedair
Journal:  Clin Cosmet Investig Dermatol       Date:  2022-07-07

2.  Identification of ultra-rare genetic variants in pediatric acute onset neuropsychiatric syndrome (PANS) by exome and whole genome sequencing.

Authors:  Rosario Trifiletti; Herbert M Lachman; Olivia Manusama; Deyou Zheng; Alberto Spalice; Pietro Chiurazzi; Allan Schornagel; Andreea M Serban; Rogier van Wijck; Janet L Cunningham; Sigrid Swagemakers; Peter J van der Spek
Journal:  Sci Rep       Date:  2022-06-30       Impact factor: 4.996

  2 in total

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