Literature DB >> 31988825

Complete genome sequence of Bifidobacterium adolescentis P2P3, a human gut bacterium possessing strong resistant starch-degrading activity.

Dong-Hyun Jung1, Won-Hyong Chung2, Dong-Ho Seo3, Ye-Jin Kim4, Young-Do Nam2, Cheon-Seok Park4.   

Abstract

Resistant starch (RS) is an important food source from which gut bacteria produce short chain fatty acids, which have beneficial effects for human health. The Bifidobacterium adolescentis P2P3, a human gut bacterium possessing a strong RS-degrading activity, was isolated from a healthy Korean adult male. In vitro experiments showed that this bacterium could utilize approximately 63% of high amylose corn starch after forming RS granule clusters. Here we provide the first complete set of genomic information on RS-degrading B. adolescentis P2P3. The genome of B. adolescentis P2P3 consists of one chromosome (2,202,982 bp) with high GC content (59.4%). Analysis of the protein-coding genes revealed that at least nineteen of the starch degradation-related enzymes were present in the genome. Among those, five genes evidently possess carbohydrate-binding domains, which are presumed to be involved in efficient RS decomposition. The complete set of genomic information on B. adolescentis P2P3 could provide an understanding of the role of RS-degrading gut bacteria and its RS degradation mechanism. © King Abdulaziz City for Science and Technology 2020.

Entities:  

Keywords:  Bifidobacterium adolescentis; Gut microbiota; Resistant starch; Whole genome

Year:  2020        PMID: 31988825      PMCID: PMC6944717          DOI: 10.1007/s13205-019-2019-7

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  30 in total

Review 1.  Genomics and ecological overview of the genus Bifidobacterium.

Authors:  Francesca Turroni; Douwe van Sinderen; Marco Ventura
Journal:  Int J Food Microbiol       Date:  2010-12-28       Impact factor: 5.277

Review 2.  Resistant starch, large bowel fermentation and a broader perspective of prebiotics and probiotics.

Authors:  A R Bird; M A Conlon; C T Christophersen; D L Topping
Journal:  Benef Microbes       Date:  2010-11       Impact factor: 4.205

3.  OrthoANI: An improved algorithm and software for calculating average nucleotide identity.

Authors:  Imchang Lee; Yeong Ouk Kim; Sang-Cheol Park; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2015-11-09       Impact factor: 2.747

4.  Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L.

Authors:  Sabrina Duranti; Francesca Turroni; Gabriele Andrea Lugli; Christian Milani; Alice Viappiani; Marta Mangifesta; Laura Gioiosa; Paola Palanza; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2014-07-25       Impact factor: 4.792

5.  Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon.

Authors:  Xiaolei Ze; Sylvia H Duncan; Petra Louis; Harry J Flint
Journal:  ISME J       Date:  2012-02-16       Impact factor: 10.302

6.  Starch-binding domain affects catalysis in two Lactobacillus alpha-amylases.

Authors:  R Rodríguez-Sanoja; B Ruiz; J P Guyot; S Sanchez
Journal:  Appl Environ Microbiol       Date:  2005-01       Impact factor: 4.792

Review 7.  Carbohydrate-binding domains: multiplicity of biological roles.

Authors:  Daniel Guillén; Sergio Sánchez; Romina Rodríguez-Sanoja
Journal:  Appl Microbiol Biotechnol       Date:  2009-11-12       Impact factor: 4.813

8.  Starch and starch hydrolysates are favorable carbon sources for bifidobacteria in the human gut.

Authors:  Songling Liu; Fazheng Ren; Liang Zhao; Lu Jiang; Yanling Hao; Junhua Jin; Ming Zhang; Huiyuan Guo; Xingen Lei; Erna Sun; Hongna Liu
Journal:  BMC Microbiol       Date:  2015-03-01       Impact factor: 3.605

9.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

10.  Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii.

Authors:  Indrani Mukhopadhya; Sarah Moraïs; Jenny Laverde-Gomez; Paul O Sheridan; Alan W Walker; William Kelly; Athol V Klieve; Diane Ouwerkerk; Sylvia H Duncan; Petra Louis; Nicole Koropatkin; Darrell Cockburn; Ryan Kibler; Philip J Cooper; Carlos Sandoval; Emmanuelle Crost; Nathalie Juge; Edward A Bayer; Harry J Flint
Journal:  Environ Microbiol       Date:  2017-12-07       Impact factor: 5.491

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  1 in total

1.  Human gut commensal bacterium Ruminococcus species FMB-CY1 completely degrades the granules of resistant starch.

Authors:  Yeong-Sik Hong; Dong-Hyun Jung; Won-Hyong Chung; Young-Do Nam; Ye-Jin Kim; Dong-Ho Seo; Cheon-Seok Park
Journal:  Food Sci Biotechnol       Date:  2022-01-10       Impact factor: 2.391

  1 in total

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