Literature DB >> 31988406

Techniques converge to map the developing human heart at single-cell level.

Ragini Phansalkar, Kristy Red-Horse.   

Abstract

Entities:  

Keywords:  Biological techniques; Developmental biology; Transcriptomics

Mesh：

Year:  2020        PMID： 31988406     DOI： 10.1038/d41586-020-00151-z

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  12 in total

1.  In situ sequencing for RNA analysis in preserved tissue and cells.

Authors:  Rongqin Ke; Marco Mignardi; Alexandra Pacureanu; Jessica Svedlund; Johan Botling; Carolina Wählby; Mats Nilsson
Journal:  Nat Methods       Date:  2013-07-14       Impact factor: 28.547

2.  Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Authors:  Patrik L Ståhl; Fredrik Salmén; Sanja Vickovic; Anna Lundmark; José Fernández Navarro; Jens Magnusson; Stefania Giacomello; Michaela Asp; Jakub O Westholm; Mikael Huss; Annelie Mollbrink; Sten Linnarsson; Simone Codeluppi; Åke Borg; Fredrik Pontén; Paul Igor Costea; Pelin Sahlén; Jan Mulder; Olaf Bergmann; Joakim Lundeberg; Jonas Frisén
Journal:  Science       Date:  2016-07-01       Impact factor: 47.728

3.  Probabilistic cell typing enables fine mapping of closely related cell types in situ.

Authors:  Xiaoyan Qian; Kenneth D Harris; Thomas Hauling; Dimitris Nicoloutsopoulos; Ana B Muñoz-Manchado; Nathan Skene; Jens Hjerling-Leffler; Mats Nilsson
Journal:  Nat Methods       Date:  2019-11-18       Impact factor: 28.547

Review 4.  Mapping human cell phenotypes to genotypes with single-cell genomics.

Authors:  J Gray Camp; Randall Platt; Barbara Treutlein
Journal:  Science       Date:  2019-09-27       Impact factor: 47.728

5.  Single-Cell Transcriptome Analysis Maps the Developmental Track of the Human Heart.

Authors:  Yueli Cui; Yuxuan Zheng; Xixi Liu; Liying Yan; Xiaoying Fan; Jun Yong; Yuqiong Hu; Ji Dong; Qingqing Li; Xinglong Wu; Shuai Gao; Jingyun Li; Lu Wen; Jie Qiao; Fuchou Tang
Journal:  Cell Rep       Date:  2019-02-12       Impact factor: 9.423

6.  Highly multiplexed subcellular RNA sequencing in situ.

Authors:  Je Hyuk Lee; Evan R Daugharthy; Jonathan Scheiman; Reza Kalhor; Joyce L Yang; Thomas C Ferrante; Richard Terry; Sauveur S F Jeanty; Chao Li; Ryoji Amamoto; Derek T Peters; Brian M Turczyk; Adam H Marblestone; Samuel A Inverso; Amy Bernard; Prashant Mali; Xavier Rios; John Aach; George M Church
Journal:  Science       Date:  2014-02-27       Impact factor: 47.728

7.  Single-Cell Sequencing of the Healthy and Diseased Heart Reveals Cytoskeleton-Associated Protein 4 as a New Modulator of Fibroblasts Activation.

Authors:  Monika M Gladka; Bas Molenaar; Hesther de Ruiter; Stefan van der Elst; Hoyee Tsui; Danielle Versteeg; Grègory P A Lacraz; Manon M H Huibers; Alexander van Oudenaarden; Eva van Rooij
Journal:  Circulation       Date:  2018-01-31       Impact factor: 29.690

8.  A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.

Authors:  Michaela Asp; Stefania Giacomello; Ludvig Larsson; Chenglin Wu; Daniel Fürth; Xiaoyan Qian; Eva Wärdell; Joaquin Custodio; Johan Reimegård; Fredrik Salmén; Cecilia Österholm; Patrik L Ståhl; Erik Sundström; Elisabet Åkesson; Olaf Bergmann; Magda Bienko; Agneta Månsson-Broberg; Mats Nilsson; Christer Sylvén; Joakim Lundeberg
Journal:  Cell       Date:  2019-12-12       Impact factor: 41.582

9.  The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.

Authors: 
Journal:  Nature       Date:  2019-10-09       Impact factor: 69.504

10.  The Human Cell Atlas.

Authors:  Aviv Regev; Sarah A Teichmann; Eric S Lander; Ido Amit; Christophe Benoist; Ewan Birney; Bernd Bodenmiller; Peter Campbell; Piero Carninci; Menna Clatworthy; Hans Clevers; Bart Deplancke; Ian Dunham; James Eberwine; Roland Eils; Wolfgang Enard; Andrew Farmer; Lars Fugger; Berthold Göttgens; Nir Hacohen; Muzlifah Haniffa; Martin Hemberg; Seung Kim; Paul Klenerman; Arnold Kriegstein; Ed Lein; Sten Linnarsson; Emma Lundberg; Joakim Lundeberg; Partha Majumder; John C Marioni; Miriam Merad; Musa Mhlanga; Martijn Nawijn; Mihai Netea; Garry Nolan; Dana Pe'er; Anthony Phillipakis; Chris P Ponting; Stephen Quake; Wolf Reik; Orit Rozenblatt-Rosen; Joshua Sanes; Rahul Satija; Ton N Schumacher; Alex Shalek; Ehud Shapiro; Padmanee Sharma; Jay W Shin; Oliver Stegle; Michael Stratton; Michael J T Stubbington; Fabian J Theis; Matthias Uhlen; Alexander van Oudenaarden; Allon Wagner; Fiona Watt; Jonathan Weissman; Barbara Wold; Ramnik Xavier; Nir Yosef
Journal:  Elife       Date:  2017-12-05       Impact factor: 8.140
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  2 in total

1.  De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks.

Authors:  Sergio Marco Salas; Xiao Yuan; Christer Sylven; Mats Nilsson; Carolina Wählby; Gabriele Partel
Journal:  PLoS Comput Biol       Date:  2022-08-12       Impact factor: 4.779

Review 2.  Big Data Approaches in Heart Failure Research.

Authors:  Jan D Lanzer; Florian Leuschner; Rafael Kramann; Rebecca T Levinson; Julio Saez-Rodriguez
Journal:  Curr Heart Fail Rep       Date:  2020-10
  2 in total

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