| Literature DB >> 31977318 |
Shuncong Wang1,2,3, Haiqing Ma1,3, Xuemin Li1,3, Xiangqiong Mo4, Haiyu Zhang1, Lewei Yang1, Yun Deng1, Yan Yan1, Guangwei Yang1,3, Xingwei Liu3,4, Huanhuan Sun3,5.
Abstract
Hepatocellular carcinoma (HCC) is a common malignancy with a dismal prognosis. It is of great importance to identify biomarkers for the prediction of patients' survival.The mRNA expression level of deoxyribonuclease 1 like 3 (DNASE1L3) and its correlation with survival were accessed in 424 samples from The Cancer Genome Atlas database. Its expression level was confirmed by real-time quantitative polymerase chain reaction and western blotting in 20 pairs of postsurgical specimens. In addition, immunohistochemistry staining of DNASE1L3 was also performed in 113 postoperative samples, using a histochemistry score system. The relationship between patients' survival and DNASE1L3 expression level was evaluated by the Kaplan-Meier method.DNASE1L3 is downregulated in both mRNA and protein levels in HCC tissues, compared with adjacent normal tissues. 52 of 113 HCC specimens showed positive DNASE1L3 protein expression. Patients with positive DNASE1L3 expression had significantly longer overall survival, compared with patients with negative expression (p = 0.023). However, the DNASE1L3 fails to discriminate progression-free survival (p = 0.134). Multivariate COX analysis revealed that positive DNASE1L3 expression and higher differentiation were significantly associated with better overall survival.This study demonstrated that positive DNASE1L3 expression is an independent prognostic factor for better survival in HCC patients following radical resection.Entities:
Keywords: DNASE1L3; TCGA; bioinformatics; hepatocellular carcinoma; prognosis
Mesh:
Substances:
Year: 2020 PMID: 31977318 PMCID: PMC7053625 DOI: 10.18632/aging.102675
Source DB: PubMed Journal: Aging (Albany NY) ISSN: 1945-4589 Impact factor: 5.682
Figure 1Comparison of DNASE1L3 expression level between HCC and adjacent normal tissues. Comparison of mRNA levels of DNASE1L3 between HCC tissues and paired normal tissues (A) and survival difference by mRNA levels (B) in the TCGA database and validation of DNASE1L3 expression level in mRNA (C) and protein level (D and E).
Summary of baseline characteristics of HCC patients in current study.
| Average | 49.89 | |
| Median | 47 | |
| Range | 25 - 90 | |
| Female | 13 | 11.50% |
| Male | 100 | 88.50% |
| Low | 13 | 11.50% |
| Medium | 74 | 65.49% |
| High | 6 | 5.31% |
| Other | 20 | 17.70% |
| Yes | 81 | 71.68% |
| No | 32 | 28.32% |
| Positive | 77 | 68.14% |
| Negative | 15 | 13.27% |
| Unknown | 21 | 18.58% |
| Elevated | 60 | 53.10% |
| Normal | 22 | 19.47% |
| Unknown | 31 | 27.43% |
| Negative | 61 | 53.98% |
| Positive | 52 | 46.02% |
| Alive | 64 | 56.64% |
| Dead | 42 | 37.17% |
| Loss of follow-up | 7 | 6.19% |
Figure 2Representative of IHC staining of DNASE1L3 in HCC. (A) negative expression, (B) weakly positive expression, (C) moderately positive expression, (D) strongly positive expression. The left side of the A, B, C, and D pictures is 200X, and the right side is 400X.
Relationship between DNASE1L3 expression and clinical characteristics.
| Average | 50.79 | 52.36 | |
| Median | 49 | 49 | |
| Range | 28-80 | 25-90 | |
| Female | 47 | 53 | 0.561 |
| Male | 5 | 8 | |
| Low | 3 | 10 | 0.269 |
| Medium | 38 | 36 | |
| High | 3 | 3 | |
| Other | 8 | 12 | |
| Yes | 34 | 47 | 0.170 |
| No | 18 | 14 | |
| Positive | 37 | 40 | 0.571 |
| Negative | 5 | 10 | |
| Unknown | 10 | 11 | |
| Elevated | 29 | 31 | 0.003 |
| Normal | 9 | 1 | |
| Unknown | 14 | 30 | |
| Alive | 36 | 28 | 0.043 |
| Dead | 14 | 28 | |
| Loss of follow-up | 2 | 5 |
Figure 3Overall survival analyses by DNASE1L3 expression level. Overall survival analyses according to DNASE1L3 status in all patients (A), male (B), female (C), patients with positive HBsAg (D), patients with negative HBsAg (E), patients not older than 50 years (F), patients older than 50 years (G), patients with HCC smaller than 3 cm in diameter (H), patients with HCC bigger than 3 cm in diameter (I), patients with HCC smaller than 5 cm in diameter (J), patients with HCC bigger than 5 cm in diameter (K) and patients with cirrhosis (L).
Figure 4Progression-free survival analyses by DNASE1L3 expression level. Progression-free survival analyses according to DNASE1L3 status in all patients (A) or according to sex (B), size (C, D), age (E), differentiation level (F), presurgical AFP (G), postsurgical AFP (H), HBsAg level (I) and cirrhosis status (J).
Univariate and multivariate Cox regression analyses for HCC patients received radical resection.
| ≤50 years | 1.0 | - | - | |||
| >50 years | 0.842-2.834 | 1.545 | 0.16 | - | - | |
| Male | 1.0 | - | - | |||
| Female | 0.430-2.796 | 1.096 | 0.847 | - | - | |
| Low | 1.0 | 1.0 | ||||
| Medium | 0.074-0.373 | 0.166 | <0.01 | 0.063-0.374 | 0.154 | <0.01 |
| High | 0.006-0.409 | 0.050 | <0.01 | 0.005-0.407 | 0.047 | <0.01 |
| Other | 0.121-0.805 | 0.312 | 0.02 | 0.094-0.723 | 0.261 | <0.01 |
| >3cm | 1.0 | - | - | |||
| ≤3cm | 0.239-1.235 | 0.543 | 0.15 | - | - | |
| Unknown | 0.531-4.278 | 1.508 | 0.44 | - | - | |
| Positive | 1.0 | 1.0 | ||||
| Negative | 0.596-3.250 | 1.392 | 0.44 | 0.366-2.653 | 0.985 | 0.98 |
| Unknown | 1.351-5.531 | 2.733 | <0.01 | 0.880-7.354 | 2.543 | 0.08 |
| Elevated | 1.0 | |||||
| Normal | 0.401-2.305 | 0.962 | 0.93 | 0.563-3.708 | 1.445 | 0.44 |
| Unknown | 1.060-4.008 | 2.061 | 0.03 | 0.529-3.838 | 1.424 | 0.48 |
| Negative | 1.0 | 1.0 | ||||
| Positive | 0.208-0.755 | 0.397 | <0.01 | 0.238-0.904 | 0.463 | 0.02 |