| Literature DB >> 31973045 |
Ilya G Shenderovich1, Gleb S Denisov2.
Abstract
The location of a mobile proton inEntities:
Keywords: NMR; condensed matter; external electric field; hydrogen bond; polarizable continuum model; proton transfer; reaction field; solvent effect
Year: 2020 PMID: 31973045 PMCID: PMC7037398 DOI: 10.3390/molecules25030436
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1The direction of the external electric field that simulates the effect of solute–solvent interactions on the H-bond.
Figure 2H-bonded complexes studied in this paper: proton-bound homodimer of pyridine (1) and complexes of 2,4,6-trimethylpyridine (collidine) with 2-nitrobenzoic acid (2), 3,5-dichlorobenzoic acid (3), formic acid (4), benzoic acid (5), and acetic acid (6).
Experimental 1J(15N1H) scalar couplings in 2–6 in CDF3/CDClF2 solution [46].
| Complex | 1 | T, K | p |
|---|---|---|---|
|
| −87.0 | 200 | 2.16 |
|
| −81.1 | 130 | 3.46 |
|
| −79.1 | 120 | 3.75 |
|
| −76.9 | 120 | 4.19 |
|
| −65.4 | 110 | 4.75 |
1 The pKa’s of the involved acids.
Figure 3Potential energy curve of a proton transfer within 1 at different approximations: (a) PCM (ε=29.3), (b) SMD (CH2Cl2, ε=8.9), (c) PCM (ε=29.3) and the external electric field of 0.001 a.u., (d) PCM (ε=29.3) and the external electric field of 0.002 a.u., (e) the external electric field of 0.003 a.u., and (f) the external electric field of 0.005 a.u. Dashed lines indicate the energy of the ground state. are the frequencies of the mobile proton stretching vibration. q1 corresponds to the distance of the mobile proton with respect to the H-bond center [51].
H-bond geometry of 4 under different DFT (Density Functional Theory) approximations.
| DFT Functional | Basis Set | PCM, ε | N···H, Å | N…O, Å |
|---|---|---|---|---|
| wB97XD | def2svp | − | 1.689 | 2.696 |
| wB97XD | def2svpp | − | 1.655 | 2.674 |
| wB97XD | def2tzvp | − | 1.701 | 2.709 |
| wB97XD | def2tzvpp | − | 1.707 | 2.712 |
| B2PLYPD3, gd3 | def2svp | − | 1.692 | 2.697 |
| B2PLYPD3, gd3 | def2svpp | − | 1.677 | 2.694 |
| B2PLYPD3, gd3 | def2tzvp | − | 1.687 | 2.700 |
| B2PLYPD3, gd3 | def2tzvpp | − | 1.694 | 2.703 |
| wB97XD | def2svp | 12.5 | 1.625 | 2.650 |
| wB97XD | def2svp | 29.3 | 1.620 | 2.647 |
| wB97XD | def2svp | 46.8 | 1.619 | 2.646 |
| wB97XD | def2svp | 108.9 | 1.617 | 2.645 |
Figure 4The effect of the external electric field on the energy of O-H···N (black □) and O−···[H-N]+ (red ○) forms of H-bonds in 2–6. For each complex, there is a unique value of the field strength for which the energy minima of the two forms are equal. corresponds to the energy with respect to the value at this field. 2: (a) PCM (ε=12.5), (b) gas-phase; 3: (c) PCM (ε=29.3), (d) gas-phase; 4: (e) PCM (ε=29.3), (f) gas-phase; 5: (g) PCM (ε=29.3), (h) gas-phase; 6: (i) PCM (ε=29.3), (j) gas-phase.
The external electric field at which the energy minima of the molecular (O-H···N) and ionic (O−···[H-N]+) forms of H-bonds in 2–6 are equal.
| Method | 2 | 3 | 4 | 5 | 6 |
|---|---|---|---|---|---|
| Field, a.u. & | 0.0004 | 0.0005 | 0.0015 | 0.0014 | 0.0027 |
| Field, a.u. (gas-phase) | 0.0044 | 0.0046 | 0.0075 | 0.0061 | 0.0082 |
Gas-phase proton affinities of selected proton acceptors.
| Acceptor | PA, kJ/mol | Acceptor | PA, kJ/mol | Acceptor | PA, kJ/mol |
|---|---|---|---|---|---|
| pyridine | 936 | 2-nitrobenzoate | 1382 | Formate | 1431 |
| collidine | 988 | 3,5-dichlorobenzoate | 1379 | Acetate | 1447 |
| benzoate | 1421 | 4-nitrophenolate | 1354 | fluoride | 1547 |
| F−···HCF3 | 1429 |
Figure 5The lower limit of the external electric field simulated the effect of CDF3/CDClF2 on 2, 3, 5 (black □), 4, 6 (red ○), and 1 (blue Δ) under the PCM (a) and gas-phase (b) approximations as a function of the pKa of the proton-donor.
Figure 6The lower limit of the external electric field simulated the effect of CDF3/CDClF2 on 2, 3, 5 (black □) and 4, 6 (red ○) under the PCM (a) and gas-phase (b) approximations as a function of the PA of the involved acids.
Figure 7A functional dependence between the lower limit of the external electric field at which the energy minima of the Acid-H···Base and Acid−···[H-Base]+ forms of an H-bonded complex in CDF3/CDClF2 are equal and the difference between the PAs of a proton donor and an acceptor, .