Literature DB >> 31972154

CRISPR-Based Synthetic Transcription Factors In Vivo: The Future of Therapeutic Cellular Programming.

Matthew Pandelakis1, Elizabeth Delgado1, Mo R Ebrahimkhani2.   

Abstract

Pinpoint control over endogenous gene expression in vivo has long been a fevered dream for clinicians and researchers alike. With the recent repurposing of programmable, RNA-guided DNA endonucleases from the CRISPR bacterial immune system, this dream is becoming a powerful reality. Engineered CRISPR/Cas9-based transcriptional regulators and epigenome editors have enabled researchers to perturb endogenous gene expression in vivo, allowing for the therapeutic reprogramming of cell and tissue behavior. For this technology to be of maximal use, a variety of technological hurdles still need to be addressed. Better understanding of the design principle controlling gene expression together with technologies that enable spatiotemporal control of transcriptional engineering are fundamental for rational design, improved efficacy, and ultimately safe translation to humans. In this review, we will discuss recent advances and integrative strategies that can help pave the path toward a new class of transcriptional therapeutics.
Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPR; Cas9; epigenome editing; in vivo cellular programing; synthetic gene circuits; synthetic transcription factor

Mesh:

Substances:

Year:  2020        PMID: 31972154      PMCID: PMC7175797          DOI: 10.1016/j.cels.2019.10.003

Source DB:  PubMed          Journal:  Cell Syst        ISSN: 2405-4712            Impact factor:   10.304


  79 in total

1.  CRISPR-Cas9-based photoactivatable transcription system.

Authors:  Yuta Nihongaki; Shun Yamamoto; Fuun Kawano; Hideyuki Suzuki; Moritoshi Sato
Journal:  Chem Biol       Date:  2015-01-22

2.  Small-molecule-based regulation of RNA-delivered circuits in mammalian cells.

Authors:  Tyler E Wagner; Jacob R Becraft; Katie Bodner; Brian Teague; Xin Zhang; Amanda Woo; Ely Porter; Bremy Alburquerque; Brian Dobosh; Oliwia Andries; Niek N Sanders; Jacob Beal; Douglas Densmore; Tasuku Kitada; Ron Weiss
Journal:  Nat Chem Biol       Date:  2018-10-16       Impact factor: 15.040

3.  A Blueprint for a Synthetic Genetic Feedback Controller to Reprogram Cell Fate.

Authors:  Domitilla Del Vecchio; Hussein Abdallah; Yili Qian; James J Collins
Journal:  Cell Syst       Date:  2017-01-05       Impact factor: 10.304

4.  CRISPR-Mediated Programmable 3D Genome Positioning and Nuclear Organization.

Authors:  Haifeng Wang; Xiaoshu Xu; Cindy M Nguyen; Yanxia Liu; Yuchen Gao; Xueqiu Lin; Timothy Daley; Nathan H Kipniss; Marie La Russa; Lei S Qi
Journal:  Cell       Date:  2018-10-11       Impact factor: 41.582

5.  Editing DNA Methylation in the Mammalian Genome.

Authors:  X Shawn Liu; Hao Wu; Xiong Ji; Yonatan Stelzer; Xuebing Wu; Szymon Czauderna; Jian Shu; Daniel Dadon; Richard A Young; Rudolf Jaenisch
Journal:  Cell       Date:  2016-09-22       Impact factor: 41.582

6.  Rewiring human cellular input-output using modular extracellular sensors.

Authors:  Kelly A Schwarz; Nichole M Daringer; Taylor B Dolberg; Joshua N Leonard
Journal:  Nat Chem Biol       Date:  2016-12-12       Impact factor: 15.040

7.  Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping.

Authors:  Stefanie L Morgan; Natasha C Mariano; Abel Bermudez; Nicole L Arruda; Fangting Wu; Yunhai Luo; Gautam Shankar; Lin Jia; Huiling Chen; Ji-Fan Hu; Andrew R Hoffman; Chiao-Chain Huang; Sharon J Pitteri; Kevin C Wang
Journal:  Nat Commun       Date:  2017-07-13       Impact factor: 14.919

8.  An enhanced CRISPR repressor for targeted mammalian gene regulation.

Authors:  Nan Cher Yeo; Alejandro Chavez; Alissa Lance-Byrne; Yingleong Chan; David Menn; Denitsa Milanova; Chih-Chung Kuo; Xiaoge Guo; Sumana Sharma; Angela Tung; Ryan J Cecchi; Marcelle Tuttle; Swechchha Pradhan; Elaine T Lim; Noah Davidsohn; Mo R Ebrahimkhani; James J Collins; Nathan E Lewis; Samira Kiani; George M Church
Journal:  Nat Methods       Date:  2018-07-16       Impact factor: 28.547

9.  Multifunctional CRISPR-Cas9 with engineered immunosilenced human T cell epitopes.

Authors:  Shayesteh R Ferdosi; Radwa Ewaisha; Farzaneh Moghadam; Sri Krishna; Jin G Park; Mo R Ebrahimkhani; Samira Kiani; Karen S Anderson
Journal:  Nat Commun       Date:  2019-04-23       Impact factor: 14.919

10.  RNA-guided gene activation by CRISPR-Cas9-based transcription factors.

Authors:  Pablo Perez-Pinera; D Dewran Kocak; Christopher M Vockley; Andrew F Adler; Ami M Kabadi; Lauren R Polstein; Pratiksha I Thakore; Katherine A Glass; David G Ousterout; Kam W Leong; Farshid Guilak; Gregory E Crawford; Timothy E Reddy; Charles A Gersbach
Journal:  Nat Methods       Date:  2013-07-25       Impact factor: 28.547

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  12 in total

1.  Pathways to de novo domestication of crop wild relatives.

Authors:  Shaun Curtin; Yiping Qi; Lázaro E P Peres; Alisdair R Fernie; Agustin Zsögön
Journal:  Plant Physiol       Date:  2022-03-28       Impact factor: 8.340

2.  Utilizing RNA origami scaffolds in Saccharomyces cerevisiae for dCas9-mediated transcriptional control.

Authors:  Georgios Pothoulakis; Michael T A Nguyen; Ebbe S Andersen
Journal:  Nucleic Acids Res       Date:  2022-07-08       Impact factor: 19.160

Review 3.  From high-throughput to therapeutic: host-directed interventions against influenza viruses.

Authors:  Joseph D Trimarco; Nicholas S Heaton
Journal:  Curr Opin Virol       Date:  2022-01-11       Impact factor: 7.121

4.  A synthetic transcription platform for programmable gene expression in mammalian cells.

Authors:  William C W Chen; Leonid Gaidukov; Yong Lai; Ming-Ru Wu; Jicong Cao; Michael J Gutbrod; Gigi C G Choi; Rachel P Utomo; Ying-Chou Chen; Liliana Wroblewska; Manolis Kellis; Lin Zhang; Ron Weiss; Timothy K Lu
Journal:  Nat Commun       Date:  2022-10-18       Impact factor: 17.694

Review 5.  Tailoring Cardiac Synthetic Transcriptional Modulation Towards Precision Medicine.

Authors:  Eric Schoger; Sara Lelek; Daniela Panáková; Laura Cecilia Zelarayán
Journal:  Front Cardiovasc Med       Date:  2022-01-14

6.  Multiplexed activation in mammalian cells using a split-intein CRISPR/Cas12a based synthetic transcription factor.

Authors:  James W Bryson; Jamie Y Auxillos; Susan J Rosser
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

7.  Orthogonal control of gene expression in plants using synthetic promoters and CRISPR-based transcription factors.

Authors:  Shaunak Kar; Yogendra Bordiya; Nestor Rodriguez; Junghyun Kim; Elizabeth C Gardner; Jimmy D Gollihar; Sibum Sung; Andrew D Ellington
Journal:  Plant Methods       Date:  2022-03-29       Impact factor: 4.993

8.  Modulating gene expression in breast cancer via DNA secondary structure and the CRISPR toolbox.

Authors:  Jessica A Kretzmann; Kelly L Irving; Nicole M Smith; Cameron W Evans
Journal:  NAR Cancer       Date:  2021-12-22

Review 9.  Use of Customizable Nucleases for Gene Editing and Other Novel Applications.

Authors:  Pradeep Reddy; Felipe Vilella; Juan Carlos Izpisua Belmonte; Carlos Simón
Journal:  Genes (Basel)       Date:  2020-08-22       Impact factor: 4.096

Review 10.  Epigenetic reprogramming of cell identity: lessons from development for regenerative medicine.

Authors:  Amitava Basu; Vijay K Tiwari
Journal:  Clin Epigenetics       Date:  2021-07-23       Impact factor: 6.551

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