| Literature DB >> 31968686 |
Maria I Alvelos1, Catarina I Gonçalves1, Eduarda Coutinho1, Joana T Almeida1,2, Margarida Bastos3, Maria L Sampaio4, Miguel Melo3,5, Sofia Martins6, Isabel Dinis7, Alice Mirante7, Leonor Gomes3,5, Joana Saraiva3,5, Bernardo D Pereira8, Susana Gama-de-Sousa9, Carolina Moreno3,5, Daniela Guelho3, Diana Martins3,5, Carla Baptista3, Luísa Barros3, Mara Ventura1,3, Maria M Gomes6,10, Manuel C Lemos1.
Abstract
Maturity-onset diabetes of the young (MODY) is a frequently misdiagnosed type of diabetes, which is characterized by early onset, autosomal dominant inheritance, and absence of insulin dependence. The most frequent subtypes are due to mutations of the GCK (MODY 2), HNF1A (MODY 3), and HNF4A (MODY 1) genes. We undertook the first multicenter genetic study of MODY in the Portuguese population. The GCK, HNF1A, and HNF4A genes were sequenced in 46 unrelated patients that had at least two of the three classical clinical criteria for MODY (age at diagnosis, family history, and clinical presentation). The functional consequences of the mutations were predicted by bioinformatics analysis. Mutations were identified in 23 (50%) families. Twelve families had mutations in the GCK gene, eight in the HNF1A gene, and three in the HNF4A gene. These included seven novel mutations (GCK c.494T>C, GCK c.563C>G, HNF1A c.1623G>A, HNF1A c.1729C>G, HNF4A c.68delG, HNF4A c.422G>C, HNF4A c.602A>C). Mutation-positive patients were younger at the time of diagnosis when compared to mutation-negative patients (14.3 vs. 23.0 years, p = 0.011). This study further expands the spectrum of known mutations associated with MODY, and may contribute to a better understanding of this type of diabetes and a more personalized clinical management of affected individuals.Entities:
Keywords: MODY; diabetes; genetics; mutation
Year: 2020 PMID: 31968686 PMCID: PMC7019520 DOI: 10.3390/jcm9010288
Source DB: PubMed Journal: J Clin Med ISSN: 2077-0383 Impact factor: 4.241
Figure 1(a–d) Families with identified maturity-onset diabetes of the young (MODY) mutations. Filled symbols represent patients with diabetes, open symbols represent unaffected individuals. Squares, circles, and diamond symbols denote males, females, and unspecified, respectively. Numbers within symbols indicate additional siblings with the same phenotype. Oblique lines through symbols represent deceased individuals. Arrows indicate the index cases. The age of diagnosis of diabetes (y, years), when known, is presented. The presence (+) or absence (–) of the mutation, when known, is presented. The chromatograms of the DNA sequence for normal individuals and for patients with mutations (asterisks) are presented below each pedigree.
Figure 2Schematic representation of the GCK, HNF1A, and HNF4A genes and positions of the identified mutations. Numbered boxes represent exons and lines represent introns (not to scale). UTR, untranslated regions. A 250 base-pair (bp) scale is shown.
Rare sequence variants identified in MODY patients.
| Gene (a) | Nucleotide Change | Amino Acid Change | Mutation Type | Population Allele Frequency (gnomAD/Portuguese Controls) | Computational Programs That Support a Pathogenic Effect (b) | Classification (ACMG Criteria) (c) | Previously Reported (Reference) |
|---|---|---|---|---|---|---|---|
|
| c.130G>A | p.Gly44Ser | missense | 0 | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PM5, PP2, PP3) | Yes [ |
| c.386G>A | p.Cys129Tyr | missense | 0 | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PP2, PP3) | Yes [ | |
| c.494T>C | p.Leu165Pro | missense | 0/0 (d) | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PP2, PP3, PP5) | No | |
| c.544G>A | p.Val182Met | missense | 0 | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PP2, PP3, PP5) | Yes [ | |
| c.556C>T | p.Arg186* | nonsense | 0 | MT | Pathogenic (PVS1, PM1, PM2, PP3, PP5) | Yes [ | |
| c.563C>G | p.Ala188Gly | missense | 0/0 (h) | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PM5, PP2, PP3) | No | |
| c.698G>A | p.Cys233Tyr | missense | 0 | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PP2, PP3) | Yes [ | |
| c.757G>C | p.Val253Leu | missense | 0 | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PM5, PM6, PP2, PP3) | Yes [ | |
| c.1099G>A | p.Val367Met | missense | 0 | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PP2, PP3, PP5) | Yes [ | |
| c.1268T>A | p.Phe423Tyr | missense | 0 | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PP2, PP3, PP5) | Yes [ | |
|
| c.425C>T | p.Ser142Phe | missense | 0 | SIFT, PPh-2, MT | L. Pathogenic (PM2, PP1, PP2, PP3, PP5) | Yes [ |
| c.475C>T | p.Arg159Trp | missense | 0.0000039 | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PM5, PP2, PP3, PP5) | Yes [ | |
| c.511C>T | p.Arg171* | nonsense | 0 | MT | Pathogenic (PVS1, PM2, PP3, PP5) | Yes [ | |
| c.521C>T | p.Ala174Val | missense | 0.0001951 | MT | VUS (PP2, PP3, BS2) | Yes [ | |
| c.607C>A | p.Arg203Ser | missense | 0 | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PM5, PP2, PP3) | Yes [ | |
| c.1623G>A | p.Gln541Gln | synonymous | 0/0 (e) | MT, HSF | VUS (PM2, PP1, PP3) | No | |
| c.1729C>G | p.His577Asp | missense | 0.0001429/0.001 (i) | SIFT, MT | VUS (PP1, PP2, PP3, BS2) | No | |
|
| c.68delG | p.Gly23Alafs*81 | frameshift | 0 | MT | Pathogenic (PVS1, PM2, PP3) | No |
| c.422G>C | p.Arg141Pro | missense | 0/0 (f) | SIFT, MT | L. Pathogenic (PM1, PM2, PP1, PP2, PP3) | No | |
| c.602A>C | p.His201Pro | missense | 0/0 (g) | SIFT, PPh-2, MT | L. Pathogenic (PM1, PM2, PP2, PP3) | No |
(a) Reference sequences are GCK (NM_000162.5), HNF1A (NM_000545.5), and HNF4A (NM_175914.3). (b) SIFT, sorting tolerant from intolerant; PPh-2, PolyPhen-2; MT, Mutation Taster; HSF, Human Splicing Finder. (c) American College of Medical Genetics and Genomics (ACMG) criteria [14] were used to classify each variant as Pathogenic, Likely (L) Pathogenic, or Variant of Uncertain Significance (VUS), based on the evidence of pathogenicity (very strong (PVS1), strong (PS1–4), moderate (PM1–6), or supporting (PP1–5)). (d–g) Determined in 200 Portuguese controls (400 alleles) using allele-specific PCR. (h) Determined in 200 Portuguese controls (400 alleles) using HpyCH4III restriction enzyme. (i) Determined in 500 Portuguese controls (1000 alleles) using allele-specific PCR.
Clinical characteristics of MODY patients with identified mutations.
| Patient ID | Sex/Age (yrs) | Age at Diagnosis (yrs) | Family History (a) | Presenting Signs and Symptoms | BMI (kg/m2) | A1c (%) | C-Peptide (ng/mL) (b) | Abs | Treatment | Complications | Last A1c (%) | Mutation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2476 | M/28 | 9 | Yes | Asymptomatic | 21.8 (*) | 7.2 | 0.10 | Yes | Insulin | Retinopathy, neuropathy, nephropathy (kidney transplant) | 5.2 | |
| 5035 | F/48 | 15 | No | Asymptomatic | 19.4 (*) | n/a | n/a | n/a | No | No | 6.5 | |
| 5227 | M/9 | 8 | No | Asymptomatic | 17.5 | 6.4 | 0.84 | No | No | No | 6.7 | |
| 6243 | F/22 | 10 | Yes | Asymptomatic | 22.3 (*) | n/a | 7.20 | No | OHA | No | 6.6 | |
| 6291 | F/12 | 11 | No | Weight loss | 17.9 | 6.0 | 4.80 | No | No | No | 6.0 | |
| 6518 | F/15 | 14 | Yes | Polyuria/polydipsia | 25.5 | 6.5 | 4.50 | No | OHA | No | 6.4 | |
| 6856 | F/16 | 6 | No | Asymptomatic | 15.5 | 6.6 | 0.82 | No | OHA | No | 6.3 | |
| 6866 | M/33 | 3 | Yes | Asymptomatic | 25.2 (*) | 6.6 | 2.52 | n/a | No | No | 6.2 | |
| 6955 | F/34 | 34 | Yes | Asymptomatic | 26.2 | 6.4 | 3.40 | No | OHA | No | 5.9 | |
| 7004 | F/32 | 31 | Yes | Gestational diabetes | 20.7 (*) | 6.1 | 0.80 | No | No | No | 6.1 | |
| 7018 | F/31 | 16 | Yes | Polyuria/polydipsia | 28.9 | 9.0 | 1.00 | No | Insulin | Retinopathy | 6.7 | |
| 7034 | M/20 | 14 | Yes | Asymptomatic | 23.4 (*) | 6.5 | 2.39 | n/a | No | No | 6.1 | |
| 7071 | F/39 | 21 | Yes | Gestational diabetes | 19.1 (*) | n/a | 0.70 | No | No | No | 6.4 | |
| 7113 | M/7 | 4 | No | Asymptomatic | 17.4 (*) | 6.4 | 1.17 | No | No | No | 6.7 | |
| 7396 | F/13 | 11 | Yes | Weight loss | 16.2 | 8.7 | 1.80 | No | Insulin | No | 5.9 | |
| 7422 | M/27 | 25 | No | Asymptomatic | 22.7 | n/a | 1.70 | No | OHA + Insulin | No | 5.1 | |
| 7451 | F/39 | 18 | Yes | Asymptomatic | 25.8 | 6.4 | 2.30 | No | OHA | No | 7.3 | |
| 7467 | F/14 | 14 | No | Asymptomatic | 22.2 | 8.0 | 1.37 | No | OHA | No | 8.0 | |
| 7613 | M/7 | 6 | No | Asymptomatic | 15.6 | 6.9 | 0.90 | No | No | No | 6.7 | |
| 7629 | F/32 | 18 | Yes | Polyuria/polydipsia | 22.9 (*) | n/a | 1.50 | No | Insulin | No | 5.6 | |
| 7646 | M/35 | 17 | Yes | Polyuria/polydipsia | 19.3 (*) | n/a | 0.10 | No | Insulin | No | 5.5 | |
| 7690 | F/18 | 14 | No | Asymptomatic | 30.7 | 6.8 | 3.60 | No | OHA | No | 7.7 | |
| 7797 | F/12 | 11 | Yes | Polyuria/polydipsia | 24.1 | 12.0 | 2.22 | No | OHA + Insulin | No | 8.1 |
(a) Autosomal dominant inheritance pattern through at least three generations, or the existence of at least two first-degree relatives with diabetes. Yrs, years. (b) Normal values > 0.8 ng/mL. M, male; F, female; BMI, body mass index (*) At last evaluation. A1c, glycated hemoglobin; Abs, positivity for at least one pancreatic autoantibody; OHA, oral hypoglycemic agents; n/a, not available.
Comparison of clinical characteristics of mutation-positive and mutation-negative patients.
| Mutation-Positive ( | Mutation-Negative ( | ||
|---|---|---|---|
| Age at diagnosis (mean ± SD) (y) | 14.3 ± 7.7 | 23.0 ± 13.2 | 0.011* |
| Family history (a) (n, %) | 14 (60.9) | 15 (65.2) | 1.000 |
| Clinical presentation and course (b) (n, %) | 22 (95.7) | 22 (95.7) | 1.000 |
| Presence of 2 inclusion criteria (n, %) | 12 (52.2) | 16 (69.6) | 0.365 |
| Presence of 3 inclusion criteria (n, %) | 11 (47.8) | 7 (30.4) | 0.365 |
(a) Autosomal dominant inheritance pattern through at least three generations, or the existence of at least two first-degree relatives with diabetes. (b) Ability to control diabetes without insulin treatment for at least two years, or significant levels of serum C-peptide, or absence of pancreatic autoantibodies. (c) Mean age compared by two-tailed Student´s t-test (*statistically significant), all other parameters compared by two-tailed Fisher’s exact test. SD, standard deviation; y, years; n, number.