Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Genome Sequence of Fusarium oxysporum f. sp. matthiolae, a Brassicaceae Pathogen.

Literature DB >> 31967942

Genome Sequence of Fusarium oxysporum f. sp. matthiolae, a Brassicaceae Pathogen.

Houlin Yu^1,2, Dilay Hazal Ayhan^2,3, Andrew C Diener⁴, Li-Jun Ma^1,2,3.

Abstract

The filamentous fungus Fusarium oxysporum is a soilborne pathogen of many cultivated species and an opportunistic pathogen of humans. F. oxysporum f. sp. matthiolae is one of three formae speciales that are pathogenic to crucifers, including Arabidopsis thaliana, a premier model for plant molecular biology and genetics. Here, we report a genome assembly of F. oxysporum f. sp. matthiolae strain PHW726, generated using a combination of PacBio and Illumina sequencing technologies. The genome assembly presented here should facilitate in-depth investigation of F. oxysporum-Arabidopsis interactions and shed light on the genetics of fungal pathogenesis and plant immunity.

Entities: Chemical Disease Gene Species

Keywords: Arabidopsis thaliana; Fusarium oxysporum f. sp. matthiolae; genome; microbe–plant molecular interaction; model

Year: 2020 PMID： 31967942 PMCID： PMC7233306 DOI： 10.1094/MPMI-11-19-0324-A

Source DB: PubMed Journal: Mol Plant Microbe Interact ISSN： 0894-0282 Impact factor: 4.171

19 in total

1. hybridSPAdes: an algorithm for hybrid assembly of short and long reads.

Authors: Dmitry Antipov; Anton Korobeynikov; Jeffrey S McLean; Pavel A Pevzner
Journal: Bioinformatics Date: 2015-11-20 Impact factor: 6.937

Review 2. Fusarium pathogenomics.

Authors: Li-Jun Ma; David M Geiser; Robert H Proctor; Alejandro P Rooney; Kerry O'Donnell; Frances Trail; Donald M Gardiner; John M Manners; Kemal Kazan
Journal: Annu Rev Microbiol Date: 2013 Impact factor: 15.500

3. RESISTANCE TO FUSARIUM OXYSPORUM 1, a dominant Arabidopsis disease-resistance gene, is not race specific.

Authors: Andrew C Diener; Frederick M Ausubel
Journal: Genetics Date: 2005-06-18 Impact factor: 4.562

4. A two-locus DNA sequence database for typing plant and human pathogens within the Fusarium oxysporum species complex.

Authors: Kerry O'Donnell; Cécile Gueidan; Stacy Sink; Peter R Johnston; Pedro W Crous; Anthony Glenn; Ron Riley; Nicholas C Zitomer; Patrick Colyer; Cees Waalwijk; Theo van der Lee; Antonio Moretti; Seogchan Kang; Hye-Seon Kim; David M Geiser; Jean H Juba; Robert P Baayen; Matthew G Cromey; Sean Bithell; Deanna A Sutton; Kerstin Skovgaard; Randy Ploetz; H Corby Kistler; Monica Elliott; Mike Davis; Brice A J Sarver
Journal: Fungal Genet Biol Date: 2009-08-26 Impact factor: 3.495

5. Diversity in receptor-like kinase genes is a major determinant of quantitative resistance to Fusarium oxysporum f.sp. matthioli.

Authors: Stephanie J Cole; Andrew C Diener
Journal: New Phytol Date: 2013-06-24 Impact factor: 10.151

10. Arabidopsis thaliana resistance to fusarium oxysporum 2 implicates tyrosine-sulfated peptide signaling in susceptibility and resistance to root infection.

Authors: Yunping Shen; Andrew C Diener
Journal: PLoS Genet Date: 2013-05-23 Impact factor: 5.917

1 in total

1. Population genomics reveals historical and ongoing recombination in the Fusarium oxysporum species complex.

Authors: A R McTaggart; T Y James; R G Shivas; A Drenth; B D Wingfield; B A Summerell; T A Duong
Journal: Stud Mycol Date: 2021-12-17 Impact factor: 16.097

1 in total

Genome Sequence of Fusarium oxysporum f. sp. matthiolae, a Brassicaceae Pathogen.

1. hybridSPAdes: an algorithm for hybrid assembly of short and long reads.

Review 2. Fusarium pathogenomics.

3. RESISTANCE TO FUSARIUM OXYSPORUM 1, a dominant Arabidopsis disease-resistance gene, is not race specific.

4. A two-locus DNA sequence database for typing plant and human pathogens within the Fusarium oxysporum species complex.

5. Diversity in receptor-like kinase genes is a major determinant of quantitative resistance to Fusarium oxysporum f.sp. matthioli.

6. The Sequence Alignment/Map format and SAMtools.

Review 7. Pathogen profile update: Fusarium oxysporum.

8. Routine mapping of Fusarium wilt resistance in BC(1) populations of Arabidopsis thaliana.

9. GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly.

10. Arabidopsis thaliana resistance to fusarium oxysporum 2 implicates tyrosine-sulfated peptide signaling in susceptibility and resistance to root infection.

1. Population genomics reveals historical and ongoing recombination in the Fusarium oxysporum species complex.