Literature DB >> 31966290

The Octocorals of Dongsha Atoll (South China Sea): An Iterative Approach to Species Identification Using Classical Taxonomy and Molecular Barcodes.

Yehuda Benayahu1, Leendert Pieter van Ofwegen2, Chang-Feng Dai3, Ming-Shiou Jeng4, Keryea Soong5, Alex Shlagman1, Samuel W Du6, Prudence Hong6, Nimrah H Imam6, Alice Chung6, Tiana Wu6, Catherine S McFadden6.   

Abstract

Yehuda Benayahu, Leendert Pieter van Ofwegen, Chang-feng Dai, Ming-Shiou Jeng, Keryea Soong, Alex Shlagman, Samuel W. Du, Prudence Hong, Nimrah H. Imam, Alice Chung, Tiana Wu, and Catherine S. McFadden (2018) Surveys of octocorals from Dongsha Atoll, Taiwan were conducted during 2011, 2013 and 2015 by SCUBA at a depth range of 6-25 m. The collections yielded ~540 specimens, encompassing the variety of taxa occurring in the explored sites; estimates of their abundances were also recorded. Dongsha features a highly diverse octocoral fauna, and octocorals are the dominant benthic organisms in the surveyed reef sites, often covering the majority of the hard substratum. Specimens were identified to the genus and species levels based on an iterative approach that integrates classical taxonomy with character-based molecular barcodes. A total of 51 nominal species representing 20 genera belonging to seven families were recorded, plus ~30 colonies that could only be assigned to a genus. Members of the family Alcyoniidae were the most abundant and diverse taxa, with 27 nominal species plus at least one potentially new, undescribed species of Sinularia, and 5-7 species each of Cladiella, Lobophytum and Sarcophyton. Problems with the taxonomic identification and phylogenetic relationships of species in these genera are discussed. The peculiarity of the Dongsha octocoral species composition is noted, and the composition is also compared to the other Taiwanese reef systems.

Entities:  

Keywords:  Alcyonacea; Coral reefs; DNA barcoding; New records; Pure characteristic attributes; Species diversity; Taiwan

Year:  2018        PMID: 31966290      PMCID: PMC6409502          DOI: 10.6620/ZS.2018.57-50

Source DB:  PubMed          Journal:  Zool Stud        ISSN: 1021-5506            Impact factor:   2.058


  17 in total

1.  New taxonomy and old collections: integrating DNA barcoding into the collection curation process.

Authors:  N Puillandre; P Bouchet; M-C Boisselier-Dubayle; J Brisset; B Buge; M Castelin; S Chagnoux; T Christophe; L Corbari; J Lambourdière; P Lozouet; G Marani; A Rivasseau; N Silva; Y Terryn; S Tillier; J Utge; S Samadi
Journal:  Mol Ecol Resour       Date:  2012-01-04       Impact factor: 7.090

2.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

3.  Limitations of mitochondrial gene barcoding in Octocorallia.

Authors:  Catherine S McFadden; Yehuda Benayahu; Eric Pante; Jana N Thoma; P Andrew Nevarez; Scott C France
Journal:  Mol Ecol Resour       Date:  2011-01       Impact factor: 7.090

4.  jModelTest 2: more models, new heuristics and parallel computing.

Authors:  Diego Darriba; Guillermo L Taboada; Ramón Doallo; David Posada
Journal:  Nat Methods       Date:  2012-07-30       Impact factor: 28.547

5.  Dongsha Atoll: A potential thermal refuge for reef-building corals in the South China Sea.

Authors:  Konstantin S Tkachenko; Keryea Soong
Journal:  Mar Environ Res       Date:  2017-04-04       Impact factor: 3.130

6.  Sinularia leptoclados (Ehrenberg, 1834) (Cnidaria, Octocorallia) re-examined.

Authors:  Leen P van Ofwegen; Yehuda Benayahu; Catherine S McFadden
Journal:  Zookeys       Date:  2013-02-25       Impact factor: 1.546

7.  A new genus of soft coral of the family Alcyoniidae (Cnidaria, Octocorallia) with re-description of a new combination and description of a new species.

Authors:  Yehuda Benayahu; Catherine S McFadden
Journal:  Zookeys       Date:  2011-03-01       Impact factor: 1.546

8.  MAFFT version 5: improvement in accuracy of multiple sequence alignment.

Authors:  Kazutaka Katoh; Kei-ichi Kuma; Hiroyuki Toh; Takashi Miyata
Journal:  Nucleic Acids Res       Date:  2005-01-20       Impact factor: 16.971

9.  Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata.

Authors:  J Rach; R Desalle; I N Sarkar; B Schierwater; H Hadrys
Journal:  Proc Biol Sci       Date:  2008-02-07       Impact factor: 5.349

10.  Sinularia polydactyla (Ehrenberg, 1834) (Cnidaria, Octocorallia) re-examined, with the description of a new species.

Authors:  Leen P van Ofwegen; Catherine S McFadden; Yehuda Benayahu
Journal:  Zookeys       Date:  2016-04-14       Impact factor: 1.546

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  3 in total

1.  The complete mitochondrial genome of Sinularia maxima Verseveldt, 1971 (Octocorallia: Alcyonacea) using next-generation sequencing.

Authors:  You Chen; Ya-Ting Dan; Hao Lu; Pei-Zheng Wang; Alireza Asem; Weidong Li
Journal:  Mitochondrial DNA B Resour       Date:  2019-10-07       Impact factor: 0.658

2.  Xeniakonohana sp. nov. (Cnidaria, Octocorallia, Alcyonacea), a new soft coral species in the family Xeniidae from Miyazaki, Japan.

Authors:  Tatsuki Koido; Yukimitsu Imahara; Hironobu Fukami
Journal:  Zookeys       Date:  2022-02-03       Impact factor: 1.546

3.  The complete mitochondrial genome of Sinularia humilis van Ofwegen, 2008 (Octocorallia: Alcyonacea).

Authors:  Chaojie Yang; Zhongjie Wu; Yujing Huang
Journal:  Mitochondrial DNA B Resour       Date:  2022-07-19       Impact factor: 0.610

  3 in total

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