Literature DB >> 31964299

Phylogenomics and biogeography of the world's thrushes (Aves, Turdus): new evidence for a more parsimonious evolutionary history.

Romina Batista1,2,3, Urban Olsson3,4, Tobias Andermann3,4, Alexandre Aleixo5, Camila Cherem Ribas6, Alexandre Antonelli3,4,7.   

Abstract

To elucidate the relationships and spatial range evolution across the world of the bird genus Turdus (Aves), we produced a large genomic dataset comprising ca 2 million nucleotides for ca 100 samples representing 53 species, including over 2000 loci. We estimated time-calibrated maximum-likelihood and multispecies coalescent phylogenies and carried out biogeographic analyses. Our results indicate that there have been considerably fewer trans-oceanic dispersals within the genus Turdus than previously suggested, such that the Palaearctic clade did not originate in America and the African clade was not involved in the colonization of the Americas. Instead, our findings suggest that dispersal from the Western Palaearctic via the Antilles to the Neotropics might have occurred in a single event, giving rise to the rich Neotropical diversity of Turdus observed today, with no reverse dispersals to the Palaearctic or Africa. Our large multilocus dataset, combined with dense species-level sampling and analysed under probabilistic methods, brings important insights into historical biogeography and systematics, even in a scenario of fast and spatially complex diversification.

Keywords:  Turdus; dispersal; next-generation sequencing; species radiations

Mesh:

Year:  2020        PMID: 31964299      PMCID: PMC7015335          DOI: 10.1098/rspb.2019.2400

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  27 in total

1.  An update of Wallace's zoogeographic regions of the world.

Authors:  Ben G Holt; Jean-Philippe Lessard; Michael K Borregaard; Susanne A Fritz; Miguel B Araújo; Dimitar Dimitrov; Pierre-Henri Fabre; Catherine H Graham; Gary R Graves; Knud A Jønsson; David Nogués-Bravo; Zhiheng Wang; Robert J Whittaker; Jon Fjeldså; Carsten Rahbek
Journal:  Science       Date:  2012-12-20       Impact factor: 47.728

2.  Quartet inference from SNP data under the coalescent model.

Authors:  Julia Chifman; Laura Kubatko
Journal:  Bioinformatics       Date:  2014-08-07       Impact factor: 6.937

3.  Model selection in historical biogeography reveals that founder-event speciation is a crucial process in Island Clades.

Authors:  Nicholas J Matzke
Journal:  Syst Biol       Date:  2014-08-14       Impact factor: 15.683

4.  Comparative genomics reveals insights into avian genome evolution and adaptation.

Authors:  Guojie Zhang; Cai Li; Qiye Li; Bo Li; Denis M Larkin; Chul Lee; Jay F Storz; Agostinho Antunes; Matthew J Greenwold; Robert W Meredith; Anders Ödeen; Jie Cui; Qi Zhou; Luohao Xu; Hailin Pan; Zongji Wang; Lijun Jin; Pei Zhang; Haofu Hu; Wei Yang; Jiang Hu; Jin Xiao; Zhikai Yang; Yang Liu; Qiaolin Xie; Hao Yu; Jinmin Lian; Ping Wen; Fang Zhang; Hui Li; Yongli Zeng; Zijun Xiong; Shiping Liu; Long Zhou; Zhiyong Huang; Na An; Jie Wang; Qiumei Zheng; Yingqi Xiong; Guangbiao Wang; Bo Wang; Jingjing Wang; Yu Fan; Rute R da Fonseca; Alonzo Alfaro-Núñez; Mikkel Schubert; Ludovic Orlando; Tobias Mourier; Jason T Howard; Ganeshkumar Ganapathy; Andreas Pfenning; Osceola Whitney; Miriam V Rivas; Erina Hara; Julia Smith; Marta Farré; Jitendra Narayan; Gancho Slavov; Michael N Romanov; Rui Borges; João Paulo Machado; Imran Khan; Mark S Springer; John Gatesy; Federico G Hoffmann; Juan C Opazo; Olle Håstad; Roger H Sawyer; Heebal Kim; Kyu-Won Kim; Hyeon Jeong Kim; Seoae Cho; Ning Li; Yinhua Huang; Michael W Bruford; Xiangjiang Zhan; Andrew Dixon; Mads F Bertelsen; Elizabeth Derryberry; Wesley Warren; Richard K Wilson; Shengbin Li; David A Ray; Richard E Green; Stephen J O'Brien; Darren Griffin; Warren E Johnson; David Haussler; Oliver A Ryder; Eske Willerslev; Gary R Graves; Per Alström; Jon Fjeldså; David P Mindell; Scott V Edwards; Edward L Braun; Carsten Rahbek; David W Burt; Peter Houde; Yong Zhang; Huanming Yang; Jian Wang; Erich D Jarvis; M Thomas P Gilbert; Jun Wang
Journal:  Science       Date:  2014-12-11       Impact factor: 47.728

5.  Phylogeography, inter-specific limits and diversification of Turdus ignobilis (Aves: Turdidae).

Authors:  Pablo Vieira Cerqueira; Marcos Pérsio Dantas Santos; Alexandre Aleixo
Journal:  Mol Phylogenet Evol       Date:  2016-01-18       Impact factor: 4.286

6.  Molecular systematics of the new world screech-owls (Megascops: Aves, Strigidae): biogeographic and taxonomic implications.

Authors:  Sidnei M Dantas; Jason D Weckstein; John M Bates; Niels K Krabbe; Carlos Daniel Cadena; Mark B Robbins; Eugenio Valderrama; Alexandre Aleixo
Journal:  Mol Phylogenet Evol       Date:  2015-10-09       Impact factor: 4.286

7.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

8.  Earth history and the passerine superradiation.

Authors:  Carl H Oliveros; Daniel J Field; Daniel T Ksepka; F Keith Barker; Alexandre Aleixo; Michael J Andersen; Per Alström; Brett W Benz; Edward L Braun; Michael J Braun; Gustavo A Bravo; Robb T Brumfield; R Terry Chesser; Santiago Claramunt; Joel Cracraft; Andrés M Cuervo; Elizabeth P Derryberry; Travis C Glenn; Michael G Harvey; Peter A Hosner; Leo Joseph; Rebecca T Kimball; Andrew L Mack; Colin M Miskelly; A Townsend Peterson; Mark B Robbins; Frederick H Sheldon; Luís Fábio Silveira; Brian Tilston Smith; Noor D White; Robert G Moyle; Brant C Faircloth
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

9.  Biological evidence supports an early and complex emergence of the Isthmus of Panama.

Authors:  Christine D Bacon; Daniele Silvestro; Carlos Jaramillo; Brian Tilston Smith; Prosanta Chakrabarty; Alexandre Antonelli
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

10.  ASTRAL: genome-scale coalescent-based species tree estimation.

Authors:  S Mirarab; R Reaz; Md S Bayzid; T Zimmermann; M S Swenson; T Warnow
Journal:  Bioinformatics       Date:  2014-09-01       Impact factor: 6.937

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  4 in total

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Journal:  Biol Futur       Date:  2020-06-04

Review 2.  A review of the cues used for rejecting foreign eggs from the nest by the Eurasian blackbird (Turdus merula).

Authors:  Andrew G Fulmer; Mark E Hauber
Journal:  Ecol Evol       Date:  2022-05-06       Impact factor: 3.167

3.  A test of altitude-related variation in aerobic metabolism of Andean birds.

Authors:  Natalia Gutierrez-Pinto; Gustavo A Londoño; Mark A Chappell; Jay F Storz
Journal:  J Exp Biol       Date:  2021-06-01       Impact factor: 3.308

4.  UCEasy: A software package for automating and simplifying the analysis of ultraconserved elements (UCEs).

Authors:  Caio V R Ribeiro; Lucas P Oliveira; Romina Batista; Marcos De Sousa
Journal:  Biodivers Data J       Date:  2021-12-10
  4 in total

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