Literature DB >> 31958502

Standard Gibbs energy of metabolic reactions: V. Enolase reaction.

Thorsten Greinert1, Kristina Vogel2, Astrid Ina Seifert1, Riko Siewert3, Irina V Andreeva3, Sergey P Verevkin3, Thomas Maskow2, Gabriele Sadowski1, Christoph Held4.   

Abstract

The glycolytic pathway is one of the most important pathways for living organisms, due to its role in energy production and as supplier of precursors for biosynthesis in living cells. This work focuses on determination of the standard Gibbs energy of reaction ΔRg'0 of the enolase reaction, the ninth reaction in the glycolysis pathway. Exact ΔRg'0 values are required to predict the thermodynamic feasibility of single metabolic reactions or even of metabolic reaction sequences under cytosolic conditions. So-called "apparent" standard data from literature are only valid at specific conditions. Nevertheless, such data are often used in pathway analyses, which might lead to misinterpretation of the results. In this work, equilibrium measurements were combined with activity coefficients in order to obtain new standard values ΔRg'0 for the enolase reaction that are independent of the cytosolic conditions. Reaction equilibria were measured at different initial substrate concentrations and temperatures of 298.15 K, 305.15 K and 310.15 K at pH 7. The activity coefficients were predicted using the equation of state electrolyte Perturbed-Chain Statistical Associating Fluid Theory (ePC-SAFT). The ePC-SAFT parameters were taken from literature or fitted to new experimentally determined osmotic coefficients and densities. At 298.15 K and pH 7, a ΔRg'0(298.15 K, pH 7) value of -2.8 ± 0.2 kJ mol-1 was obtained. This value differs by up to 5 kJ mol-1 from literature data. Reasons are the poorly defined "standard" conditions and partly undefined reaction conditions of literature works. Finally, using temperature-dependent equilibrium constants and the van 't Hoff equation, the standard enthalpy of reaction of ΔRh'0(298.15 K, pH 7) = 27 ± 10 kJ mol-1 was determined, and a similar value was found by quantum-chemistry calculations.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Year:  2020        PMID: 31958502     DOI: 10.1016/j.bbapap.2020.140365

Source DB:  PubMed          Journal:  Biochim Biophys Acta Proteins Proteom        ISSN: 1570-9639            Impact factor:   3.036


  4 in total

1.  A thermodynamic insight into viral infections: do viruses in a lytic cycle hijack cell metabolism due to their low Gibbs energy?

Authors:  Marko Popovic; Mirjana Minceva
Journal:  Heliyon       Date:  2020-05-08

2.  New thermodynamic activity-based approach allows predicting the feasibility of glycolysis.

Authors:  Thorsten Greinert; Kristina Vogel; Thomas Maskow; Christoph Held
Journal:  Sci Rep       Date:  2021-03-17       Impact factor: 4.379

3.  Strain wars 2: Binding constants, enthalpies, entropies, Gibbs energies and rates of binding of SARS-CoV-2 variants.

Authors:  Marko Popovic
Journal:  Virology       Date:  2022-03-29       Impact factor: 3.513

4.  Thermodynamics and Kinetics of Glycolytic Reactions. Part II: Influence of Cytosolic Conditions on Thermodynamic State Variables and Kinetic Parameters.

Authors:  Kristina Vogel; Thorsten Greinert; Monique Reichard; Christoph Held; Hauke Harms; Thomas Maskow
Journal:  Int J Mol Sci       Date:  2020-10-25       Impact factor: 5.923

  4 in total

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