Literature DB >> 31957786

Exploiting natural variation in root system architecture via genome-wide association studies.

Agnieszka Deja-Muylle1,2, Boris Parizot1,2, Hans Motte1,2, Tom Beeckman1,2.   

Abstract

Root growth and development has become an important research topic for breeders and researchers based on a growing need to adapt plants to changing and more demanding environmental conditions worldwide. Over the last few years, genome-wide association studies (GWASs) became an important tool to identify the link between traits in the field and their genetic background. Here we give an overview of the current literature concerning GWASs performed on root system architecture (RSA) in plants. We summarize which root traits and approaches have been used for GWAS, mentioning their respective success rate towards a successful gene discovery. Furthermore, we zoom in on the current technical hurdles in root phenotyping and GWAS, and discuss future possibilities in this field of research.
© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Keywords:  Genome-wide association studies; SNP; natural variation; root development; root phenotyping; root system architecture; root trait

Mesh:

Year:  2020        PMID: 31957786     DOI: 10.1093/jxb/eraa029

Source DB:  PubMed          Journal:  J Exp Bot        ISSN: 0022-0957            Impact factor:   6.992


  5 in total

1.  An allelic variant in the ACS7 gene promotes primary root growth in watermelon.

Authors:  Ahmed Mahmoud; Rui Qi; Haoshun Zhao; Haiyang Yang; Nanqiao Liao; Abid Ali; Guy Kateta Malangisha; Yuyuan Ma; Kejia Zhang; Yimei Zhou; Yuelin Xia; Xiaolong Lyu; Jinghua Yang; Mingfang Zhang; Zhongyuan Hu
Journal:  Theor Appl Genet       Date:  2022-08-18       Impact factor: 5.574

2.  Plant organ and tip growth.

Authors:  Kris Vissenberg; Nathalie Gonzalez
Journal:  J Exp Bot       Date:  2020-04-23       Impact factor: 6.992

3.  AtPiezo Plays an Important Role in Root Cap Mechanotransduction.

Authors:  Xianming Fang; Beibei Liu; Qianshuo Shao; Xuemei Huang; Jia Li; Sheng Luan; Kai He
Journal:  Int J Mol Sci       Date:  2021-01-05       Impact factor: 5.923

4.  Genetic Variability of Arabidopsis thaliana Mature Root System Architecture and Genome-Wide Association Study.

Authors:  Agnieszka Deja-Muylle; Davy Opdenacker; Boris Parizot; Hans Motte; Guillaume Lobet; Veronique Storme; Pieter Clauw; Maria Njo; Tom Beeckman
Journal:  Front Plant Sci       Date:  2022-01-28       Impact factor: 5.753

5.  Biochar induced improvement in root system architecture enhances nutrient assimilation by cotton plant seedlings.

Authors:  Guangmu Tang; Zengchao Geng; Lei Feng; Wanli Xu; Meiying Gu
Journal:  BMC Plant Biol       Date:  2021-06-11       Impact factor: 4.215

  5 in total

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