Literature DB >> 31957541

Molecular entrapment by RNA: an emerging tool for disrupting protein-RNA interactions in vivo.

Tarjani N Shukla1, Jane Song1, Zachary T Campbell1.   

Abstract

mRNA function is controlled by RNA-binding proteins. The specificity of RNA-binding factors for their targets is critical in that it enables all subsequent regulation. Despite widespread recognition of the pervasive role RNA-binding proteins play in development and disease, they remain challenging to target with small molecules. A renaissance in RNA therapeutics has led to the identification of modifications that substantially increase RNA stability. When combined with information regarding specificity, a new class of oligonucleotide mimics has emerged as a means to competitively disrupt the regulation of endogenous substrates. These decoys have been used to inhibit RNA-binding proteins in living animals. Decoys will likely provide new insights into the expansive roles of RNA-binding proteins in biology and disease. Here, we describe examples where they have been used and discuss how they could be applied to new targets.

Keywords:  RNA decoys; RNA protein interactions; RNA-binding proteins; Specificity

Mesh:

Substances:

Year:  2020        PMID: 31957541      PMCID: PMC7237136          DOI: 10.1080/15476286.2020.1717059

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  103 in total

1.  Sequence, Structure, and Context Preferences of Human RNA Binding Proteins.

Authors:  Daniel Dominguez; Peter Freese; Maria S Alexis; Amanda Su; Myles Hochman; Tsultrim Palden; Cassandra Bazile; Nicole J Lambert; Eric L Van Nostrand; Gabriel A Pratt; Gene W Yeo; Brenton R Graveley; Christopher B Burge
Journal:  Mol Cell       Date:  2018-06-07       Impact factor: 17.970

2.  A small circular TAR RNA decoy specifically inhibits Tat-activated HIV-1 transcription.

Authors:  P R Bohjanen; R A Colvin; M Puttaraju; M D Been; M A Garcia-Blanco
Journal:  Nucleic Acids Res       Date:  1996-10-01       Impact factor: 16.971

3.  The RNA-binding protein HuD promotes spinal GAP43 overexpression in antiretroviral-induced neuropathy.

Authors:  M D Sanna; A Quattrone; T Mello; C Ghelardini; N Galeotti
Journal:  Exp Neurol       Date:  2014-05-24       Impact factor: 5.330

Review 4.  RNA control in pain: Blame it on the messenger.

Authors:  June Bryan I de la Peña; Jane J Song; Zachary T Campbell
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-05-14       Impact factor: 9.957

5.  ALS-associated fused in sarcoma (FUS) mutations disrupt Transportin-mediated nuclear import.

Authors:  Dorothee Dormann; Ramona Rodde; Dieter Edbauer; Eva Bentmann; Ingeborg Fischer; Alexander Hruscha; Manuel E Than; Ian R A Mackenzie; Anja Capell; Bettina Schmid; Manuela Neumann; Christian Haass
Journal:  EMBO J       Date:  2010-07-06       Impact factor: 11.598

Review 6.  Translational Control Mechanisms in Persistent Pain.

Authors:  Arkady Khoutorsky; Theodore J Price
Journal:  Trends Neurosci       Date:  2018-02       Impact factor: 13.837

7.  Tumor-targeted Nanoparticle Delivery of HuR siRNA Inhibits Lung Tumor Growth In Vitro and In Vivo By Disrupting the Oncogenic Activity of the RNA-binding Protein HuR.

Authors:  Ranganayaki Muralidharan; Anish Babu; Narsireddy Amreddy; Akhil Srivastava; Allshine Chen; Yan Daniel Zhao; Uday B Kompella; Anupama Munshi; Rajagopal Ramesh
Journal:  Mol Cancer Ther       Date:  2017-06-01       Impact factor: 6.261

8.  CPEB phosphorylation and cytoplasmic polyadenylation are catalyzed by the kinase IAK1/Eg2 in maturing mouse oocytes.

Authors:  R Hodgman; J Tay; R Mendez; J D Richter
Journal:  Development       Date:  2001-07       Impact factor: 6.868

9.  sCLIP-an integrated platform to study RNA-protein interactomes in biomedical research: identification of CSTF2tau in alternative processing of small nuclear RNAs.

Authors:  Yulia Kargapolova; Michal Levin; Karl Lackner; Sven Danckwardt
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

10.  Global pairwise RNA interaction landscapes reveal core features of protein recognition.

Authors:  Qin Zhou; Nikesh Kunder; José Alberto De la Paz; Alexandra E Lasley; Vandita D Bhat; Faruck Morcos; Zachary T Campbell
Journal:  Nat Commun       Date:  2018-06-28       Impact factor: 14.919

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  1 in total

1.  Reversal of RNA toxicity in myotonic dystrophy via a decoy RNA-binding protein with high affinity for expanded CUG repeats.

Authors:  Ludovic Arandel; Magdalena Matloka; Arnaud F Klein; Frédérique Rau; Alain Sureau; Michel Ney; Aurélien Cordier; Maria Kondili; Micaela Polay-Espinoza; Naira Naouar; Arnaud Ferry; Mégane Lemaitre; Séverine Begard; Morvane Colin; Chloé Lamarre; Hélène Tran; Luc Buée; Joëlle Marie; Nicolas Sergeant; Denis Furling
Journal:  Nat Biomed Eng       Date:  2022-02-10       Impact factor: 25.671

  1 in total

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