Literature DB >> 31956989

Apoptosis detection via automated algorithms to analyze biomarker translocation in reporter cells.

A H Rezwanuddin Ahmed1, Zeynep Dereli-Korkut1, Joanne Haeun Lee1, Sidra Piracha1, M Lane Gilchrist2, Xuejun Jiang3, Sihong Wang1.   

Abstract

Rapid, efficient, and robust quantitative analyses of dynamic apoptotic events are essential in a high-throughput screening workflow. Currently used methods have several bottlenecks, specifically, limitations in available fluorophores for downstream assays and misinterpretation of statistical image data analysis. In this study, we developed cytochrome-C (Cyt-C) and caspase-3/-8 reporter cell lines using lung (PC9) and breast (T47D) cancer cells, and characterized them from the response to apoptotic stimuli. In these two reporter cell lines, the spatial fluorescent signal translocation patterns served as reporters of activations of apoptotic events, such as Cyt-C release and caspase-3/-8 activation. We also developed a vision-based, tunable, automated algorithm in MATLAB to implement the robust and accurate analysis of signal translocation in single or multiple cells. Construction of the reporter cell lines allows live monitoring of apoptotic events without the need for any other dyes or fixatives. Our algorithmic implementation forgoes the use of simple image statistics for more robust analytics. Our optimized algorithm can achieve a precision greater than 90% and a sensitivity higher than 85%. Combining our automated algorithm with reporter cells bearing a single-color dye/fluorophore, we expect our approach to become an integral component in the high-throughput drug screening workflow.
© 2020 Wiley Periodicals, Inc.

Entities:  

Keywords:  biomarker translocation; caspase-3; caspase-8; cytochrome-C; detection algorithm; reporter cells

Mesh:

Substances:

Year:  2020        PMID: 31956989      PMCID: PMC7703573          DOI: 10.1002/bit.27280

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  41 in total

1.  Bax is present as a high molecular weight oligomer/complex in the mitochondrial membrane of apoptotic cells.

Authors:  B Antonsson; S Montessuit; B Sanchez; J C Martinou
Journal:  J Biol Chem       Date:  2001-01-02       Impact factor: 5.157

Review 2.  Measuring apoptosis at the single cell level.

Authors:  Lisa Bouchier-Hayes; Cristina Muñoz-Pinedo; Samuel Connell; Douglas R Green
Journal:  Methods       Date:  2008-03       Impact factor: 3.608

3.  Automatic image analysis of multicellular apoptosis process.

Authors:  Riccardo Ziraldo; Nichole Link; John Abrams; Lan Ma
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

Review 4.  Caspase functions in cell death and disease.

Authors:  David R McIlwain; Thorsten Berger; Tak W Mak
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-04-01       Impact factor: 10.005

5.  Induction of apoptosis by staurosporine involves the inhibition of expression of the major cell cycle proteins at the G(2)/m checkpoint accompanied by alterations in Erk and Akt kinase activities.

Authors:  Andreas Antonsson; Jenny L Persson
Journal:  Anticancer Res       Date:  2009-08       Impact factor: 2.480

6.  Molecular determinants of the caspase-promoting activity of Smac/DIABLO and its role in the death receptor pathway.

Authors:  S M Srinivasula; P Datta; X J Fan; T Fernandes-Alnemri; Z Huang; E S Alnemri
Journal:  J Biol Chem       Date:  2000-11-17       Impact factor: 5.157

7.  Nuclear translocation of caspase-3 is dependent on its proteolytic activation and recognition of a substrate-like protein(s).

Authors:  Shinji Kamada; Ushio Kikkawa; Yoshihide Tsujimoto; Tony Hunter
Journal:  J Biol Chem       Date:  2004-11-29       Impact factor: 5.157

8.  Dynamics of outer mitochondrial membrane permeabilization during apoptosis.

Authors:  M Rehm; H J Huber; C T Hellwig; S Anguissola; H Dussmann; J H M Prehn
Journal:  Cell Death Differ       Date:  2009-01-09       Impact factor: 15.828

9.  Efficacy of ImageJ in the assessment of apoptosis.

Authors:  Iman M Helmy; Adel M Abdel Azim
Journal:  Diagn Pathol       Date:  2012-02-06       Impact factor: 2.644

10.  DeadEasy caspase: automatic counting of apoptotic cells in Drosophila.

Authors:  Manuel G Forero; Jenny A Pennack; Anabel R Learte; Alicia Hidalgo
Journal:  PLoS One       Date:  2009-05-05       Impact factor: 3.240

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