| Literature DB >> 31953519 |
Tanoy Mukherjee1,2, Lalit Kumar Sharma3, Goutam K Saha2, Mukesh Thakur1, Kailash Chandra1.
Abstract
The IndianEntities:
Mesh:
Year: 2020 PMID: 31953519 PMCID: PMC6969075 DOI: 10.1038/s41598-020-57547-0
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Showing study area map. (A) Showing Gorumara National Park (GNP), Chapramari Wildlife Sanctuary (CWLS) and Bridge area along with road and rail network in red and black lines respectively. Background topographic surface has been created by adding ESRI base map (Topographic) in ArcGIS 10.6. (B) Field picture of one-horned rhino (Rhinoceros unicornis) in its natural habitat of GNP. (C) The extant distribution of one-horned rhino (Rhinoceros unicornis) as per IUCN. (Maps are generated using ArcGIS 10.6: www.esri.com).
Figure 2Representing the different landcover classes in GNP buffer forest, in multitemporal datasets. Upper panel starting from the left describes the landcover types in the year 1998, 2008 and 2018. The lower panel represents the stimulated ANN (Artificial neural network) and LR (Logistic Regression) models for the year 2028. (Maps are generated using ArcGIS 10.6: www.esri.com).
Model fit metrics for each of the four species distribution modelling methods. Boosted Regression Tree (BRT), Random Forest (RF), Generalized Linear Model (GLM), and Generalized Additive Model (GAM). Model fit metrics included area under the receiver operator curve (AUC), Proportion Correctly Classified (PCC), True Skill Statistic (TSS), Cohen’s kappa, sensitivity, and specificity. Model fit was assessed on the training data used to fit the model as well as the withheld test data used for model evaluation.
| METHOD | DATASET | AUC | Δ AUC | PCC | TSS | KAPPA | SPECIFICITY | SENCITIVITY |
|---|---|---|---|---|---|---|---|---|
| BRT | TRAIN | 0.956 | 0.07 | 89.811 | 0.795 | 0.782 | 0.898 | 0.897 |
| CV | 0.885 ± 0.11 | 83.454 ± 12.01 | 0.654 ± 0.234 | 0.652 ± 0.23 | 0.854 ± 0.17 | 0.8 ± 0.19 | ||
| GLM | TRAIN | 0.947 | 0.13 | 87.962 | 0.755 | 0.743 | 0.884 | 0.871 |
| CV | 0.812 ± 0.17 | 76 ± 12.11 | 0.508 ± 0.311 | 0.478 ± 0.30 | 0.783 ± 0.15 | 0.725 ± 0.342 | ||
| MARS | TRAIN | 0.926 | 0.08 | 86.111 | 0.726 | 0.707 | 0.855 | 0.871 |
| CV | 0.846 ± 0.12 | 77.818 ± 8.86 | 0.555 ± 0.19 | 0.535 ± 0.17 | 0.780 ± 0.15 | 0.775 ± 0.21 | ||
| MAXENT | TRAIN | 0.937 | 0.04 | 85.981 | 0.724 | 0.705 | 0.852 | 0.871 |
| CV | 0.893 ± 0.08 | 84.181 ± 9.57 | 0.679 ± 0.20 | 0.665 ± 0.19 | 0.854 ± 0.15 | 0.825 ± 0.20 | ||
| RF | TRAIN | 0.881 | 0 | 82.407 | 0.646 | 0.629 | 0.826 | 0.82 |
| CV | 0.881 ± 0.09 | 81.545 ± 5.93 | 0.636 ± 0.13 | 0.613 ± 0.11 | 0.811 ± 0.11 | 0.825 ± 0.16 |
Variable importance using the increase in Area under the Curve (AUC) when each predictor variable is permuted using five different modelling environment to model habitat suitability of Rhino in GNP buffer forest. Area_am = Patch Area Distribution (area-weighted mean), Euclidian distance function from bare land landcover type = Bare land, Euclidian distance function from grassland landcover type = Grassland, Interspersion & Juxtaposition Index = Iji, Landscape Shape Index = Lsi, Number of Patches = NP, Euclidian distance function from river bank landcover type = Riverbank, Euclidian distance function from shrubland landcover type = Shrubland, Euclidian distance function from water = Water, Euclidian distance function from woodland landcover type = Woodland.
| Variable Code | RF | BRT | GLM | MARS | MAXENT | µ AUC (Mean) |
|---|---|---|---|---|---|---|
| Area_am | 0 | — | — | — | 0.003 | 0.001 |
| Bare land | 0.169 | 0.140 | 0.202 | 0.212 | 0.101 | 0.165 |
| Grassland | 0.189 | 0.242 | 0.393 | 0.301 | 0.283 | 0.281 |
| Iji | 0.019 | — | — | 0.019 | 0.034 | 0.024 |
| Lsi | 0 | — | 0.061 | — | 0 | 0.020 |
| NP | 0 | — | — | — | 0.004 | 0.002 |
| River bank | 0.006 | 0.006 | — | — | 0 | 0.004 |
| Shrubland | 0.001 | 0.015 | 0.055 | — | 0.002 | 0.024 |
| Water | 0.002 | — | — | — | 0 | 0.001 |
| Woodland | 0.001 | 0.022 | 0.123 | 0.069 | 0.032 | 0.049 |
Figure 3Maps indicating the number of participating models predicting habitat suitability for Rhino in GNP landscape of different decadal scenario, i.e. from the year 1998 (extreme left) to the year 2028 (absolute right). Each model surface displays a different threshold used to dichotomize continuous probabilities into a binary outcome. (Maps are generated using ArcGIS 10.6: www.esri.com).
Figure 4Decadal change in Mean Suitability area for rhino from the year 1998 to 2028. Mean suitability was computed in three zones, i.e. in two protected areas (GNP and CWLS) along with the bridge area outside the PAs.
Quality estimation of suitable area for rhino based on ensemble models. Change in fragmentation of rhino suitable habitat in the GNP landscape during four scenarios, i.e., in 1998, 2008, 2018 and 2028. Table show metrics quantifying the area and fragmentation of grid cells in the ensemble model where the rhino was projected to be present, including total area Class Area (CA), mean patch area (AREA_MN), Largest Patch Index (LPI) and Aggregation Index (AI).
| Year | CA (ha) | PD (no. of patches/100 ha) | LPI % | AREA_MN (ha) | AI % |
|---|---|---|---|---|---|
| 1998 | 5541.75 | 3.272 | 2.509 | 5.233 | 79.544 |
| 2008 | 6059.34 | 3.350 | 2.179 | 5.689 | 80.149 |
| 2018 | 5327.19 | 2.844 | 2.250 | 5.790 | 81.058 |
| 2028 | 9715.23 | 1.469 | 19.045 | 20.803 | 84.738 |
Variables used for landscape modelling. The topographic variables were used as surface texture/configuration drivers, temperature and moisture drivers as a proxy for bioclimatic drivers, and the influence of rail and road development was considered as the anthropogenic variables. Geomorphometric and gradient metrics toolbox were used for the calculation of matrices and processed in ArcGIS 10.6.
| Variables | Abbreviation | TYPE |
|---|---|---|
| Compound topographic index | CTI | Continuous |
| Integrated Moisture Index | IMI | Continuous |
| Heat load index | HLI | Continuous |
| Linear aspect | LA | Continuous |
| Euclidian distance function from road | EU_ROAD | Continuous |
| Euclidian distance function from rail | EU_RAIL | Continuous |
| Roughness | RH | Continuous |