Literature DB >> 31950325

The best CRISPR/Cas9 versus RNA interference approaches for Arabinogalactan proteins' study.

Diana Moreira1,2, Ana Marta Pereira3, Ana Lúcia Lopes1,4, Sílvia Coimbra5,6.   

Abstract

Arabinogalactan Proteins (AGPs) are hydroxyproline-rich proteins containing a high proportion of carbohydrates, widely spread in the plant kingdom. AGPs have been suggested to play important roles in plant development processes, especially in sexual plant reproduction. Nevertheless, the functions of a large number of these molecules, remains to be discovered. In this review, we discuss two revolutionary genetic techniques that are able to decode the roles of these glycoproteins in an easy and efficient way. The RNA interference is a frequently technique used in plant biology that promotes genes silencing. The Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-associated protein 9 (CRISPR/Cas9), emerged a few years ago as a revolutionary genome-editing technique that has allowed null mutants to be obtained in a wide variety of organisms, including plants. The two techniques have some differences between them and depending on the research objective, these may work as advantage or disadvantage. In the present work, we propose the use of the two techniques to obtain AGP mutants easily and quickly, helping to unravel the role of AGPs, surely a great asset for the future.

Entities:  

Keywords:  Arabinogalactan proteins; CRISPR/Cas9; Mutants; Plant genome engineering; RNA interference

Mesh:

Substances:

Year:  2020        PMID: 31950325     DOI: 10.1007/s11033-020-05258-0

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  77 in total

Review 1.  The multiple roles of arabinogalactan proteins in plant development.

Authors:  A Majewska-Sawka; E A Nothnagel
Journal:  Plant Physiol       Date:  2000-01       Impact factor: 8.340

Review 2.  Arabinogalactan-proteins: structure, expression and function.

Authors:  A M Showalter
Journal:  Cell Mol Life Sci       Date:  2001-09       Impact factor: 9.261

3.  Using genomic resources to guide research directions. The arabinogalactan protein gene family as a test case.

Authors:  Carolyn J Schultz; Michael P Rumsewicz; Kim L Johnson; Brian J Jones; Yolanda M Gaspar; Antony Bacic
Journal:  Plant Physiol       Date:  2002-08       Impact factor: 8.340

Review 4.  Arabinogalactan proteins in root and pollen-tube cells: distribution and functional aspects.

Authors:  Eric Nguema-Ona; Sílvia Coimbra; Maïté Vicré-Gibouin; Jean-Claude Mollet; Azeddine Driouich
Journal:  Ann Bot       Date:  2012-07       Impact factor: 4.357

5.  Involvement of Arabidopsis RACK1 in protein translation and its regulation by abscisic acid.

Authors:  Jianjun Guo; Shucai Wang; Oliver Valerius; Hardy Hall; Qingning Zeng; Jian-Feng Li; David J Weston; Brian E Ellis; Jin-Gui Chen
Journal:  Plant Physiol       Date:  2010-11-19       Impact factor: 8.340

6.  Functional identification of a hydroxyproline-o-galactosyltransferase specific for arabinogalactan protein biosynthesis in Arabidopsis.

Authors:  Debarati Basu; Yan Liang; Xiao Liu; Klaus Himmeldirk; Ahmed Faik; Marcia Kieliszewski; Michael Held; Allan M Showalter
Journal:  J Biol Chem       Date:  2013-02-19       Impact factor: 5.157

Review 7.  Arabinogalactan proteins: rising attention from plant biologists.

Authors:  Ana Marta Pereira; Luís Gustavo Pereira; Sílvia Coimbra
Journal:  Plant Reprod       Date:  2015-02-06       Impact factor: 3.767

8.  A bioinformatics approach to the identification, classification, and analysis of hydroxyproline-rich glycoproteins.

Authors:  Allan M Showalter; Brian Keppler; Jens Lichtenberg; Dazhang Gu; Lonnie R Welch
Journal:  Plant Physiol       Date:  2010-04-15       Impact factor: 8.340

9.  Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis.

Authors:  Georg H H Borner; Kathryn S Lilley; Timothy J Stevens; Paul Dupree
Journal:  Plant Physiol       Date:  2003-05-01       Impact factor: 8.340

10.  Pollen grain development is compromised in Arabidopsis agp6 agp11 null mutants.

Authors:  Sílvia Coimbra; Mário Costa; Brian Jones; Marta Adelina Mendes; Luís Gustavo Pereira
Journal:  J Exp Bot       Date:  2009-05-11       Impact factor: 6.992

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  5 in total

Review 1.  Arabinogalactan Proteins: Focus on the Role in Cellulose Synthesis and Deposition during Plant Cell Wall Biogenesis.

Authors:  Sue Lin; Yingjing Miao; Huiting Huang; Yuting Zhang; Li Huang; Jiashu Cao
Journal:  Int J Mol Sci       Date:  2022-06-13       Impact factor: 6.208

Review 2.  Application of CRISPR-Cas9 System to Study Biological Barriers to Drug Delivery.

Authors:  Ji He; Riya Biswas; Piyush Bugde; Jiawei Li; Dong-Xu Liu; Yan Li
Journal:  Pharmaceutics       Date:  2022-04-20       Impact factor: 6.525

3.  Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice.

Authors:  Ankit Verma; Geeta Prakash; Rajeev Ranjan; Akhilesh K Tyagi; Pinky Agarwal
Journal:  Front Genet       Date:  2021-01-12       Impact factor: 4.599

Review 4.  CRISPR/Cas9 Genome Editing Technology: A Valuable Tool for Understanding Plant Cell Wall Biosynthesis and Function.

Authors:  Yuan Zhang; Allan M Showalter
Journal:  Front Plant Sci       Date:  2020-11-20       Impact factor: 5.753

Review 5.  Overview of paratransgenesis as a strategy to control pathogen transmission by insect vectors.

Authors:  Norman A Ratcliffe; João P Furtado Pacheco; Paul Dyson; Helena Carla Castro; Marcelo S Gonzalez; Patricia Azambuja; Cicero B Mello
Journal:  Parasit Vectors       Date:  2022-03-31       Impact factor: 3.876

  5 in total

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