Literature DB >> 31945378

From Genetic Association to Molecular Mechanisms for Islet-cell Dysfunction in Type 2 Diabetes.

Katia K Mattis1, Anna L Gloyn2.   

Abstract

Genome-wide association studies (GWAS) have identified over 400 signals robustly associated with risk for type 2 diabetes (T2D). At the vast majority of these loci, the lead single nucleotide polymorphisms (SNPs) reside in noncoding regions of the genome, which hampers biological inference and translation of genetic discoveries into disease mechanisms. The study of these T2D risk variants in normoglycemic individuals has revealed that a significant proportion are exerting their disease risk through islet-cell dysfunction. The central role of the islet is also demonstrated by numerous studies, which have shown an enrichment of these signals in islet-specific epigenomic annotations. In recent years the emergence of authentic human beta-cell lines, and advances in genome-editing technologies coupled with improved protocols differentiating human pluripotent stem cells into beta-like cells has opened up new opportunities for T2D disease modeling. Here we review the current understanding on the genetic basis of T2D focusing on approaches, which have facilitated the identification of causal variants and their effector transcripts in human islets. We will present examples of functional studies based on animal and conventional cellular systems and highlight the potential of novel stem cell-based T2D disease models.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  GWAS; Type 2 diabetes; effector transcript; epigenomic annotation; regulatory variant

Year:  2020        PMID: 31945378     DOI: 10.1016/j.jmb.2019.12.045

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  10 in total

Review 1.  Functional Genomics in Pancreatic β Cells: Recent Advances in Gene Deletion and Genome Editing Technologies for Diabetes Research.

Authors:  Ming Hu; Ines Cherkaoui; Shivani Misra; Guy A Rutter
Journal:  Front Endocrinol (Lausanne)       Date:  2020-10-08       Impact factor: 5.555

2.  IP6-assisted CSN-COP1 competition regulates a CRL4-ETV5 proteolytic checkpoint to safeguard glucose-induced insulin secretion.

Authors:  Hong Lin; Yuan Yan; Yifan Luo; Wing Yan So; Xiayun Wei; Xiaozhe Zhang; Xiaoli Yang; Jun Zhang; Yang Su; Xiuyan Yang; Bobo Zhang; Kangjun Zhang; Nan Jiang; Billy Kwok Chong Chow; Weiping Han; Fengchao Wang; Feng Rao
Journal:  Nat Commun       Date:  2021-04-28       Impact factor: 14.919

3.  Identification and functional study of GATA4 gene regulatory variants in type 2 diabetes mellitus.

Authors:  Liangcai Ding; Mengdi Cai; Lu Chen; Han Yan; Shicheng Lu; Shuchao Pang; Bo Yan
Journal:  BMC Endocr Disord       Date:  2021-04-17       Impact factor: 2.763

4.  INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants.

Authors:  Chenyang Dong; Shane P Simonett; Sunyoung Shin; Donnie S Stapleton; Kathryn L Schueler; Gary A Churchill; Leina Lu; Xiaoxiao Liu; Fulai Jin; Yan Li; Alan D Attie; Mark P Keller; Sündüz Keleş
Journal:  Genome Biol       Date:  2021-08-23       Impact factor: 17.906

5.  Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits.

Authors:  Peter Orchard; Nandini Manickam; Christa Ventresca; Swarooparani Vadlamudi; Arushi Varshney; Vivek Rai; Jeremy Kaplan; Claudia Lalancette; Karen L Mohlke; Katherine Gallagher; Charles F Burant; Stephen C J Parker
Journal:  Genome Res       Date:  2021-11-23       Impact factor: 9.438

6.  The Effect of SOCS2 Polymorphisms on Type 2 Diabetes Mellitus Susceptibility and Diabetic Complications in the Chinese Han Population.

Authors:  Juan Pan; Rui Tong; Qing Deng; Yanni Tian; Ning Wang; Yanqi Peng; Sijia Fei; Wei Zhang; Jiaqi Cui; Chaoying Guo; Juanchuan Yao; Cui Wei; Jing Xu
Journal:  Pharmgenomics Pers Med       Date:  2022-01-29

7.  Association of cluster determinant 36, scavenger receptor class B type 1, and major facilitator superfamily domain containing the 2a genetic polymorphism with serum lipid profile in aging population with type 2 diabetes mellitus.

Authors:  Xixiang Wang; Xiaojun Ma; Jingjing Xu; Yujie Guo; Shaobo Zhou; Huiyan Yu; Linhong Yuan
Journal:  Front Nutr       Date:  2022-09-14

Review 8.  Functional genomics, genetic risk profiling and cell phenotypes in neurodegenerative disease.

Authors:  Steven Finkbeiner
Journal:  Neurobiol Dis       Date:  2020-09-23       Impact factor: 5.996

Review 9.  Modeling Maturity Onset Diabetes of the Young in Pluripotent Stem Cells: Challenges and Achievements.

Authors:  Carmel Braverman-Gross; Nissim Benvenisty
Journal:  Front Endocrinol (Lausanne)       Date:  2021-02-22       Impact factor: 5.555

10.  Four groups of type 2 diabetes contribute to the etiological and clinical heterogeneity in newly diagnosed individuals: An IMI DIRECT study.

Authors:  Agata Wesolowska-Andersen; Caroline A Brorsson; Roberto Bizzotto; Andrea Mari; Andrea Tura; Robert Koivula; Anubha Mahajan; Ana Vinuela; Juan Fernandez Tajes; Sapna Sharma; Mark Haid; Cornelia Prehn; Anna Artati; Mun-Gwan Hong; Petra B Musholt; Azra Kurbasic; Federico De Masi; Kostas Tsirigos; Helle Krogh Pedersen; Valborg Gudmundsdottir; Cecilia Engel Thomas; Karina Banasik; Chrisopher Jennison; Angus Jones; Gwen Kennedy; Jimmy Bell; Louise Thomas; Gary Frost; Henrik Thomsen; Kristine Allin; Tue Haldor Hansen; Henrik Vestergaard; Torben Hansen; Femke Rutters; Petra Elders; Leen t'Hart; Amelie Bonnefond; Mickaël Canouil; Soren Brage; Tarja Kokkola; Alison Heggie; Donna McEvoy; Andrew Hattersley; Timothy McDonald; Harriet Teare; Martin Ridderstrale; Mark Walker; Ian Forgie; Giuseppe N Giordano; Philippe Froguel; Imre Pavo; Hartmut Ruetten; Oluf Pedersen; Emmanouil Dermitzakis; Paul W Franks; Jochen M Schwenk; Jerzy Adamski; Ewan Pearson; Mark I McCarthy; Søren Brunak
Journal:  Cell Rep Med       Date:  2022-01-04
  10 in total

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