Literature DB >> 31942666

Characterization of Bacterial and Fungal Communities Reveals Novel Consortia in Tropical Oligotrophic Peatlands.

Elise S Morrison1,2, P Thomas3, A Ogram4, T Kahveci3, B L Turner5, J P Chanton6.   

Abstract

Despite their importance for global biogeochemical cycles and carbon sequestration, the microbiome of tropical peatlands remains under-determined. Microbial interactions within peatlands can regulate greenhouse gas production, organic matter turnover, and nutrient cycling. Here we analyze bacterial and fungal communities along a steep P gradient in a tropical peat dome and investigate community level traits and network analyses to better understand the composition and potential interactions of microorganisms in these understudied systems and their relationship to peatland biogeochemistry. We found that both bacterial and fungal community compositions were significantly different along the P gradient, and that the low-P bog plain was characterized by distinct fungal and bacterial families. At low P, the dominant fungal families were cosmopolitan parasites and endophytes, including Clavicipitaceae (19%) in shallow soils (0-4 cm), Hypocreaceae (50%) in intermediate-depth soils (4-8 cm), and Chaetothyriaceae (45%) in deep soils (24-30 cm). In contrast, high- and intermediate-P sites were dominated by saprotrophic families at all depths. Bacterial communities were consistently dominated by the acidophilic Koribacteraceae family, with the exception of the low-P bog site, which was dominated by Acetobacteraceae (19%) and Syntrophaceae (11%). These two families, as well as Rhodospirillaceae, Syntrophobacteraceae, Syntrophorhabdaceae, Spirochaetaceae, and Methylococcaceae appeared within low-P bacterial networks, suggesting the presence of a syntrophic-methanogenic consortium in these soils. Further investigation into the active microbial communities at these sites, when paired with CH4 and CO2 gas exchange, and the quantification of metabolic intermediates will validate these potential interactions and provide insight into microbially driven biogeochemical cycling within these globally important tropical peatlands.
© 2020. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Bacterial and fungal communities; Metabarcoding; Microbial networks; Peat; Phosphorus

Year:  2020        PMID: 31942666     DOI: 10.1007/s00248-020-01483-z

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  26 in total

1.  New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities.

Authors:  Katarina Ihrmark; Inga T M Bödeker; Karelyn Cruz-Martinez; Hanna Friberg; Ariana Kubartova; Jessica Schenck; Ylva Strid; Jan Stenlid; Mikael Brandström-Durling; Karina E Clemmensen; Björn D Lindahl
Journal:  FEMS Microbiol Ecol       Date:  2012-07-27       Impact factor: 4.194

2.  Intermediary ecosystem metabolism as a main driver of methanogenesis in acidic wetland soil.

Authors:  Harold L Drake; Marcus A Horn; Pia K Wüst
Journal:  Environ Microbiol Rep       Date:  2009-07-21       Impact factor: 3.541

3.  Environmental controls of temporal and spatial variability in CO2 and CH4 fluxes in a neotropical peatland.

Authors:  Emma L Wright; Colin R Black; Benjamin L Turner; Sofie Sjögersten
Journal:  Glob Chang Biol       Date:  2013-10-20       Impact factor: 10.863

4.  Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea.

Authors:  Daniel Pr Herlemann; Matthias Labrenz; Klaus Jürgens; Stefan Bertilsson; Joanna J Waniek; Anders F Andersson
Journal:  ISME J       Date:  2011-04-07       Impact factor: 10.302

5.  rRNA operon copy number reflects ecological strategies of bacteria.

Authors:  J A Klappenbach; J M Dunbar; T M Schmidt
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

6.  Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil.

Authors:  Qiuming Yao; Zhou Li; Yang Song; S Joseph Wright; Xuan Guo; Susannah G Tringe; Malak M Tfaily; Ljiljana Paša-Tolić; Terry C Hazen; Benjamin L Turner; Melanie A Mayes; Chongle Pan
Journal:  Nat Ecol Evol       Date:  2018-01-22       Impact factor: 15.460

7.  Sparse and compositionally robust inference of microbial ecological networks.

Authors:  Zachary D Kurtz; Christian L Müller; Emily R Miraldi; Dan R Littman; Martin J Blaser; Richard A Bonneau
Journal:  PLoS Comput Biol       Date:  2015-05-07       Impact factor: 4.475

8.  PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform.

Authors:  Hyun S Gweon; Anna Oliver; Joanne Taylor; Tim Booth; Melanie Gibbs; Daniel S Read; Robert I Griffiths; Karsten Schonrogge
Journal:  Methods Ecol Evol       Date:  2015-05-25       Impact factor: 7.781

9.  Decreases in average bacterial community rRNA operon copy number during succession.

Authors:  Diana R Nemergut; Joseph E Knelman; Scott Ferrenberg; Teresa Bilinski; Brett Melbourne; Lin Jiang; Cyrille Violle; John L Darcy; Tiffany Prest; Steven K Schmidt; Alan R Townsend
Journal:  ISME J       Date:  2015-11-13       Impact factor: 10.302

10.  Differences in microbial community structure and nitrogen cycling in natural and drained tropical peatland soils.

Authors:  Mikk Espenberg; Marika Truu; Ülo Mander; Kuno Kasak; Hiie Nõlvak; Teele Ligi; Kristjan Oopkaup; Martin Maddison; Jaak Truu
Journal:  Sci Rep       Date:  2018-03-16       Impact factor: 4.379

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  2 in total

1.  Plants Play Stronger Effects on Soil Fungal than Bacterial Communities and Co-Occurrence Network Structures in a Subtropical Tree Diversity Experiment.

Authors:  Huiyun Gan; Xingchun Li; Yonglong Wang; Pengpeng Lü; Niuniu Ji; Hui Yao; Shan Li; Liangdong Guo
Journal:  Microbiol Spectr       Date:  2022-04-27

2.  Shifts in Soil Microbial Community Composition, Function, and Co-occurrence Network of Phragmites australis in the Yellow River Delta.

Authors:  Pengcheng Zhu; Shuren Yang; Yuxin Wu; Yuning Ru; Xiaona Yu; Lushan Wang; Weihua Guo
Journal:  Front Microbiol       Date:  2022-07-19       Impact factor: 6.064

  2 in total

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