| Literature DB >> 31941689 |
Neena Kanwar1, Jeffrey Michael1, Kathryn Doran1, Emily Montgomery1, Rangaraj Selvarangan2.
Abstract
Early diagnosis of influenza (Flu) is critical for patient management and infection control. The ID Now influenza A & B 2 (ID Now) assay (Abbott Laboratories), Cobas influenza A/B nucleic acid test (LIAT; Roche Molecular Systems, Inc.), and Xpert Xpress Flu (Xpert; Cepheid) are rapid, point-of-care molecular assays for Flu virus detection. The study aim was to compare the performances of these three commercially available Clinical Laboratory Improvement Amendments (CLIA)-waived Flu virus assays. We prospectively enrolled 201 children <18 years old from January to April 2018 and collected nasopharyngeal swab specimens in viral medium. Aliquots were frozen for testing on different diagnostic platforms, as per the manufacturers' instructions. CDC Flu A/B PCR was used as a reference method to evaluate the performances of these three platforms. Among the 201 specimens tested, the CDC Flu A/B PCR assay detected Flu A/B virus in 107 samples (Flu A virus, 73 samples; Flu B virus, 36 samples; dual Flu A/B virus positive, 2 samples), while the ID Now virus detected 102 samples (Flu A virus, 69 samples; Flu B virus, 37 samples; dual Flu A/B virus positive, 4 samples; invalid rate, 1/201 [0.5%]), the LIAT detected 112 samples (Flu A virus, 74 samples; Flu B virus, 38 samples; invalid rate, 11/201 [5.5%]), and the Xpert assay detected 112 samples (Flu A virus, 76 samples; Flu B virus, 36 samples; invalid rate, 6/201 [3.0%]). The overall sensitivities for the ID Now assay, LIAT, and Xpert assay for Flu A virus detection (93.2%, 100%, and 100%, respectively) and Flu B virus detection (97.2%, 94.4%, and 91.7%, respectively) were comparable. The specificity for Flu A and B virus detection by all methods was >97%. These molecular assays had higher sensitivity than did a historical standard-of-care test from the BD Veritor antigen test (Flu A virus, 79.5%; Flu B virus, 66.7%).Entities:
Keywords: children; influenza detection; molecular diagnostic assays performance
Mesh:
Year: 2020 PMID: 31941689 PMCID: PMC7041562 DOI: 10.1128/JCM.01611-19
Source DB: PubMed Journal: J Clin Microbiol ISSN: 0095-1137 Impact factor: 5.948
Performances of the ID Now, LIAT, Xpert, and BD assays versus that of the CDC Flu A/B PCR assay
| Assay | Virus target | No. with result | % (95% CI) for: | ||||
|---|---|---|---|---|---|---|---|
| TP | FP | TN | FN | Sensitivity | Specificity | ||
| ID Now | Flu A | 68 | 1 | 127 | 5 | 93.2 (84.1–97.5) | 99.2 (95.1–100.0) |
| Flu B | 35 | 2 | 163 | 1 | 97.2 (83.8–99.9) | 98.8 (95.2–99.8) | |
| LIAT | Flu A | 73 | 1 | 127 | 0 | 100 (93.8–100) | 99.2 (95.1–100.0) |
| Flu B | 34 | 4 | 161 | 2 | 94.4 (80.0–99.0) | 97.6 (93.5–99.2) | |
| Xpert | Flu A | 73 | 3 | 125 | 0 | 100 (93.8–100) | 97.7 (92.8–99.4) |
| Flu B | 33 | 3 | 162 | 3 | 91.7 (76.4–97.8) | 98.2 (94.4–99.5) | |
| BD | Flu A | 58 | 1 | 126 | 15 | 79.5 (68.1–87.7) | 99.2 (95.0–99.9) |
| Flu B | 24 | 1 | 163 | 12 | 66.7 (48.9–80.9) | 99.4 (96.1–99.9) | |
TP, true positive; FP, false positive; TN, true negative; FN, false negative. The number of dual Flu A/B-positive results were 2 for the CDC Flu A/B PCR, 4 for the ID Now assay, 0 for the LIAT, 0 for the Xpert assay, and 0 for the BD assay.
BD results were available for 200 subjects. Standard-of-care testing for one subject was PCR based.
Performance characteristics of the ID Now assay on full- versus early callout mode
| ID Now assay callout mode | Virus target | No. with result | % (95% CI) for: | ||||
|---|---|---|---|---|---|---|---|
| TP | TN | FP | FN | Sensitivity | Specificity | ||
| Full | Flu A | 23 | 78 | 0 | 1 | 95.8 (76.9–99.8) | 100 (94.2–100) |
| Flu B | 21 | 79 | 2 | 0 | 100 (80.8–100) | 97.5 (90.5–99.6) | |
| Early | Flu A | 23 | 78 | 0 | 1 | 95.8 (76.9–99.8) | 100 (94.2–100) |
| Flu B | 21 | 77 | 4 | 0 | 100 (80.8–100) | 95.1 (87.2–98.4) | |
TP, true positive; FP, false positive; TN, true negative; FN, false negative.
Clinical characteristics overall and by Flu virus detection results as determined by the CDC Flu A/B PCR assay
| Clinical characteristic | No. (%) in group: | |||
|---|---|---|---|---|
| Overall ( | Flu-positive result ( | Flu-negative result ( | ||
| Fever | 194 (96.5) | 103 (96.3) | 91 (96.8) | 1.0 |
| Cough | 174 (86.6) | 100 (93.5) | 74 (78.7) | 0.003 |
| Fatigue | 153 (76.1) | 89 (83.2) | 64 (68.1) | 0.01 |
| Headache | 91 (45.3) | 61 (57.0) | 30 (31.9) | <0.001 |
| Myalgias | 84 (41.8) | 57 (53.3) | 27 (28.7) | <0.001 |
| Sore throat | 78 (38.8) | 55 (51.4) | 23 (24.5) | <0.001 |
| Dyspnea | 77 (38.3) | 38 (35.5) | 39 (41.5) | 0.47 |
| Abdominal pain | 75 (37.3) | 46 (43.0) | 29 (30.9) | 0.08 |
| Conjunctivitis | 72 (35.8) | 47 (43.9) | 25 (26.6) | 0.01 |
| Wheezing | 70 (34.8) | 36 (33.6) | 34 (36.2) | 0.77 |
| Vomiting | 56 (27.9) | 30 (28.0) | 26 (27.7) | 1.0 |
| Earache | 53 (26.4) | 24 (22.4) | 29 (30.9) | 0.2 |
| Diarrhea | 40 (19.9) | 19 (17.8) | 21 (22.3) | 0.48 |