| Literature DB >> 31936797 |
Magdalena Topolska1, Fernando Martínez-Montañés1, Christer S Ejsing1,2.
Abstract
De novo fatty acid synthesis is a pivotal enzymatic process in all eukaryotic organisms. It is involved in the conversion of glucose and other nutrients to fatty acyl (FA) chains, that cells use as building blocks for membranes, energy storage, and signaling molecules. Central to this multistep enzymatic process is the cytosolic type I fatty acid synthase complex (FASN) which in mammals produces, according to biochemical textbooks, primarily non-esterified palmitic acid (NEFA 16:0). The activity of FASN is commonly measured using a spectrophotometry-based assay that monitors the consumption of the reactant NADPH. This assay is indirect, can be biased by interfering processes that use NADPH, and cannot report the NEFA chain-length produced by FASN. To circumvent these analytical caveats, we developed a simple mass spectrometry-based assay that affords monitoring of FASN activity and its product-specificity. In this assay (i) purified FASN is incubated with 13C-labeled malonyl-CoA, acetyl-CoA, and NADPH, (ii) at defined time points the reaction mixture is spiked with an internal NEFA standard and extracted, and (iii) the extract is analyzed directly, without vacuum evaporation and chemical derivatization, by direct-infusion high-resolution mass spectrometry in negative ion mode. This assay supports essentially noise-free detection and absolute quantification of de novo synthetized 13C-labled NEFAs. We demonstrate the efficacy of our assay by determining the specific activity of purified cow FASN and show that in addition to the canonical NEFA 16:0 this enzyme also produces NEFA 12:0, 14:0, 18:0, and 20:0. We note that our assay is generic and can be carried out using commonly available high-resolution mass spectrometers with a resolving power as low as 95,000. We deem that our simple assay could be used as high-throughput screening technology for developing potent FASN inhibitors and for enzyme engineering aimed at modulating the activity and the product-landscape of fatty acid synthases.Entities:
Keywords: Orbitrap mass spectrometry; enzyme activity; fatty acid synthase; high-resolution shotgun lipidomics
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Year: 2020 PMID: 31936797 PMCID: PMC7023185 DOI: 10.3390/biom10010118
Source DB: PubMed Journal: Biomolecules ISSN: 2218-273X
Figure 1Specific monitoring of de novo synthetized 13C-labeled NEFAs. (A) Negative ion mode Fourier transform mass spectrometry (FTMS) analysis of deprotonated 13C-labeled NEFA analytes. Purified fatty acid synthase complex (FASN) was incubated with 13C3-malonyl-CoA, acetyl-CoA and NADPH (top panel) or acetyl-CoA and NADPH (lower panel) at 37 °C for 10 min. Subsequently the reaction mixtures were subjected to total fatty acyl (FA) analysis [26] using acid-catalyzed hydrolysis in the presence of internal 19:0-CoA standard, followed by extraction with hexane and FTMS analysis using an LTQ Orbitrap XL mass spectrometer. Ions representing the internal standard are indicated in blue, while detected 13C-labeled NEFAs are indicated in red. The abundant ions at m/z 288.2925 and 293.1757 are due to non-interfering chemical background noise. (B–F) 13C isotopologue distribution of indicated NEFA species. Data represent average values and dots individual measurements (n = 4 independent reactions extracted and analyzed separately). (G) Average pmol of de novo synthetized 13C-labeled NEFA per µg FASN per 10 min. Data represent average values and dots individual measurements (n = 4 independent reactions extracted and analyzed separately).
Figure 2Optimizing the workflow for monitoring FASN activity in vitro. Purified FASN was incubated with 13C3-malonyl-CoA, acetyl-CoA and NADPH at 37 °C for 10 min. The reaction mixtures (200 µL), with de novo synthetized 13C-labeled NEFAs, were processed using one of the four indicated strategies (see the Results and Material and Methods sections for details). Deprotonated NEFAs were detected by negative ion mode FTMS using an LTQ Orbitrap XL mass spectrometer and quantified using the internal NEFA 16:0(+2H4) standard and normalized to the amount of FASN. Data represent average values and dots individual measurements (n = 3 independent reactions extracted and analyzed separately).
Figure 3Determination of specific FASN activity. (A) Time series analysis of total de novo synthetized 13C-labeled NEFAs across a 90 min period. Purified FASN was incubated with 13C3-malonyl-CoA, acetyl-CoA, and NADPH at 37 °C for the indicated times. The reaction mixtures were extracted using a Bligh and Dyer-based approach without sample evaporation. Extracts were analyzed directly by FTMS on an Orbitrap Fusion Tribrid mass spectrometer and 13C-labeled NEFAs were quantified using the internal standard NEFA 16:0(+2H4). Data represent average values and dots individual measurements (n = 2 independent reactions extracted and analyzed separately). (B–D) Time series analysis of de novo synthetized 13C-labeled NEFA 14:0, 16:0, and 18:0 across a 2 min period, representing the initial rate of the FASN-catalyzed reaction. The assay was carried out as outlined in (A). Data represent average values and dots individual measurements (n = 3 independent reactions extracted and analyzed separately). Lines represent linear regressions having the indicated slope values and regression coefficients. (E) Summary of estimated specific FASN activity for different NEFA species and calculation of total specific activity in terms of NEFAs and NADPH equivalents.