| Literature DB >> 31932583 |
Xian Zeng1,2, Gang Yu1, Yang Lu2, Linhua Tan1, Xiujing Wu1, Shanshan Shi1, Huilong Duan2, Qiang Shu3, Haomin Li4.
Abstract
PIC (Paediatric Intensive Care) is a large paediatric-specific, single-centre, bilingual database comprising information relating to children admitted to critical care units at a large children's hospital in China. The database is deidentified and includes vital sign measurements, medications, laboratory measurements, fluid balance, diagnostic codes, length of hospital stays, survival data, and more. The data are publicly available after registration, which includes completion of a training course on research with human subjects and signing of a data use agreement mandating responsible handling of the data and adherence to the principle of collaborative research. Although the PIC can be considered an extension of the widely used MIMIC (Medical Information Mart for Intensive Care) database in the field of paediatric critical care, it has many unique characteristics and can support database-based academic and industrial applications such as machine learning algorithms, clinical decision support tools, quality improvement initiatives, and international data sharing.Entities:
Mesh:
Year: 2020 PMID: 31932583 PMCID: PMC6957490 DOI: 10.1038/s41597-020-0355-4
Source DB: PubMed Journal: Sci Data ISSN: 2052-4463 Impact factor: 6.444
Fig. 1Overview of the PIC database.
An overview of the data tables in the PIC database.
| Table name | Description | Rows |
|---|---|---|
| ADMISSIONS | Every unique hospitalization for each patient in the database (defines HADM_ID) | 13,449 |
| CHARTEVENTS | All charted observations for the patients from the hospital database, not including bedside monitor trends and lab events. | 2,278,978 |
| D_ICD_DIAGNOSES | Dictionary of International Statistical Classification of Diseases and Related Health Problems (ICD-10) codes and International Classification of Diseases for Oncology (ICD-O-3) relating to diagnoses. | 25,378 |
| D_ITEMS | Dictionary of local codes (’ITEMIDs’) appearing in the PIC database, except those that relate to laboratory tests. | 466 |
| D_LABITEMS | Dictionary of local codes (’ITEMIDs’) appearing in the PIC database that relate to laboratory tests. | 832 |
| DIAGNOSES_ICD | Hospital assigned diagnoses, coded using the ICD-10 Chinese code and the ICD-O-3 Chinese code. | 13,365 |
| EMR_SYMPTOMS | Structured symptoms extracted from notes, including nursing and physician notes, discharge summaries and so on. | 402,142 |
| ICUSTAYS | Every unique ICU stay in the database (defines ICUSTAY_ID). | 13,941 |
| INPUTEVENTS | Calculated fluid input data every morning for each patient in ICU. | 26,884 |
| LABEVENTS | Laboratory measurements for patients from the hospital database. | 10,094,117 |
| MICROBIOLOGYEVENTS | Microbiology culture results and antibiotic sensitivities from the hospital database. | 183,869 |
| OR_EXAM_REPORTS | Contains all exams performed during the patient’s stay. | 183,809 |
| OUTPUTEVENTS | Output information for patients from the hospital database. | 39,891 |
| PATIENTS | Every unique patient in the database (defines SUBJECT_ID). | 12,881 |
| PRESCRIPTIONS | Medications ordered for a given patient | 1,256,591 |
| SURGERY_VITAL_SIGNS | Vital signs recorded every 5 minutes during the surgery | 1,216,011 |
Details of the PIC patient population by the first critical care unit on hospital admission.
| Critical care unit | CICU | GICU | NICU | PICU | SICU | Total |
|---|---|---|---|---|---|---|
| Patients, no. (%) | 2583 (20.1%) | 2642 (20.5%) | 3137 (24.4%) | 1953 (15.2%) | 2566 (19.9%) | 12881 (100%) |
| Admissions, no. (%) | 2638 (19.6%) | 2725 (20.3%) | 3205 (23.8%) | 2084 (15.5%) | 2797 (20.8%) | 13449 (100%) |
| ICU stay, no. (%) | 2803 (20.1%) | 2788 (20.0%) | 3282 (23.5%) | 2166 (15.5%) | 2902 (20.8%) | 13941 (100%) |
| Age, years, mean (Q1–Q3) | 2.5 (0.5–3.1) | 3.8 (0.4–6.3) | 14.5 days (0.0–18.0) | 3.6 (0.5–5.7) | 3.2 (0.4–4.9) | 2.5 (0.1–3.3) |
| Gender, male, % of unit stays | 1391 (49.6%) | 1712 (61.4%) | 1984 (60.5%) | 1250 (57.7%) | 1680 (57.9%) | 8017 (57.5%) |
| ICU LOS, mean days (Q1–Q3) | 3.9 (0.9–4.0) | 7.3 (0.9–8.9) | 21.6 (2.5–32.8) | 9.7 (2.0–11.1) | 2.3 (0.8–1.6) | 9.3 (0.9–9.2) |
| HLOS, mean days (Q1–Q3) | 16.6 (9.0–19.2) | 12.8 (3.8–16.2) | 27.1 (9.6–37.8) | 14.5 (4.6–16.7) | 14.7 (7.0–18.7) | 17.6 (7.0–21.0) |
| ICU mortality, % | 48 (1.7%) | 414 (14.8%) | 236 (7.2%) | 200 (9.2%) | 57 (2.0%) | 955 (6.9%) |
| Hospital mortality, % | 53 (2.0%) | 417 (15.3%) | 239 (7.5%) | 205 (9.8%) | 57 (2.0%) | 971 (7.2%) |
CICU: cardiac intensive care unit; GICU: general intensive care unit; NICU: neonatal intensive care unit; PICU: paediatric intensive care unit; SICU: surgical intensive care unit; LOS: length of stay.
Differences of the PIC and the MIMIC-III.
| MIMIC-III | PIC | |
|---|---|---|
| Language | English | English-Chinese bilingual |
| Data source | 673-bed general hospital with OB/GYN | 1900-bed children’s hospital |
| Category of critical care | CCU, CSRU, MICU, SICU, TSICU, NICU Total 77 critical care beds | CICU, SICU, PICU, NICU, GICU Total 119 paediatric critical care beds |
| Number of records | 50,000+ | 10,000+ |
| Patient age, median (Q1–Q3) | 60.6 years (42.1–74.1) | 0.8 years (0.1–3.5) |
| Vital signs | Bedside monitor generated (1 hour) | Daily nurse recorded & surgery monitor generated (5 minute) |
| Laboratory/clinical data | Yes | Yes |
| Clinician notes | Yes | Extracted symptoms from notes |
| Diagnoses codes | ICD-9 Codes | ICD-10 Codes and ICD-O-3 Codes |
| Mortality | Death recorded in the hospital and social security database | Death recorded in the hospital |
Fig. 2Age distributions of the MIMIC-III and the PIC databases. (a) MIMIC-III database. (b) PIC database.
Amount of complete data grouped by table.
| Table Name | Coverage Rate | Coverage Group |
|---|---|---|
| CHARTEVENTS | 79.7% | high |
| DIAGNOSES_ICD | 99.4% | excellent |
| EMR_SYMPTOMS | 6.7% | low |
| INPUTEVENTS | 41.1% | medium |
| LABEVENTS | 93.9% | excellent |
| MICROBIOLOGYEVENTS | 89.7% | excellent |
| OR_EXAM_REPORTS | 91.9% | excellent |
| OUTPUTEVENTS | 11.7% | low |
| PRESCRIPTIONS | 51.5% | medium |
| SURGERY_VITAL_SIGNS | 47.7% | medium |
Coverage rate was calculated at the admission level. Low (0–20%), medium (20–60%), high (60–80%), and excellent (80–100%).
Fig. 3Visualization of the PIC data. (a) The timeline of a patient during the hospital stay. (b) Synchronized timelines of different data types.
| Measurement(s) | Demographics • Vital Signs Measurement • Medication • clinical laboratory measurement • fluid balance • length of hospital stay • survival time • microbiological information |
| Technology Type(s) | digital curation |
| Sample Characteristic - Organism | Homo sapiens |
| Sample Characteristic - Environment | Intensive Care Unit |
| Sample Characteristic - Location | China |
Distribution of primary diagnosis by care unit for patients in the PIC database.
| Critical care unit | CICU | GICU | NICU | PICU | SICU | Total |
|---|---|---|---|---|---|---|
| Certain infectious and parasitic diseases (A00-B99) | 4 (0.2%) | 117 (4.4%) | 44 (1.4%) | 91 (4.4%) | 12 (0.4%) | 268 (2.0%) |
| Neoplasms (C00–D48) | 26 (1.0%) | 198 (7.8%) | 3 (0.1%) | 49 (2.4%) | 230 (8.1%) | 506 (3.8%) |
| Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism (D50-D89) | 0 (0.0%) | 167 (6.3%) | 11 (0.3%) | 95 (4.6%) | 10 (0.4%) | 283 (2.1%) |
| Endocrine, nutritional and metabolic diseases (E00-E90) | 4 (0.2%) | 64 (2.4%) | 37 (1.2%) | 57 (2.7%) | 22 (0.8%) | 184 (1.4%) |
| Mental and behavioural disorders (F00-F90) | 0 (0.0%) | 58 (2.2%) | 1 (0.0%) | 2 (0.1%) | 2 (0.1%) | 63 (0.5%) |
| Diseases of the nervous system (G00-G99) | 0 (0.0%) | 201 (7.6%) | 38 (1.2%) | 274 (13.2%) | 246 (8.8%) | 759 (5.7%) |
| Diseases of the eye and adnexa (H00–H59) | 0 (0.0%) | 0 (0.0%) | 9 (0.3%) | 2 (0.1%) | 8 (0.3%) | 19 (0.1%) |
| Diseases of the ear and mastoid process (H60–H95) | 0 (0.0%) | 0 (0.0%) | 0 (0.0%) | 1 (0.0%) | 3 (0.1%) | 4 (0.0%) |
| Diseases of the circulatory system (I00–I99) | 314 (11.9%) | 110 (4.2%) | 78 (2.4%) | 153 (7.3%) | 110 (3.9%) | 765 (5.7%) |
| Diseases of the respiratory system (J00–J99) | 189 (7.2%) | 430 (16.3%) | 173 (5.4%) | 518 (24.9%) | 65 (2.3%) | 1375 (10.3%) |
| Diseases of the digestive system (K00–K93) | 56 (2.1%) | 184 (7.0%) | 184 (5.7%) | 102 (4.9%) | 483 (17.3%) | 1009 (7.5%) |
| Diseases of the skin and subcutaneous tissue (L00–L99) | 0 (0.0%) | 7 (0.3%) | 4 (0.1%) | 7 (0.3%) | 19 (0.7%) | 37 (0.3%) |
| Diseases of the musculoskeletal system and connective tissue (M00–M99) | 0 (0.0%) | 43 (1.6%) | 14 (0.4%) | 11 (0.5%) | 7 (0.3%) | 75 (0.6%) |
| Diseases of the genitourinary system (N00–N99) | 0 (0.0%) | 388 (14.7%) | 8 (0.2%) | 13 (0.6%) | 12 (0.4%) | 421 (3.2%) |
| Pregnancy, childbirth and the puerperium (O00–O99) | 0 (0.0%) | 0 (0.0%) | 4 (0.1%) | 0 (0.0%) | 0 (0.0%) | 4 (0.0%) |
| Certain conditions originating in the perinatal period (P00–P96) | 34 (1.3%) | 12 (0.5%) | 1801 (56.2%) | 11 (0.5%) | 27 (1.0%) | 1885 (14.1%) |
| Congenital malformations, deformations and chromosomal abnormalities (Q00–Q99) | 1962 (74.4%) | 199 (7.5%) | 463 (14.4%) | 74 (3.6%) | 699 (25.0%) | 3397 (25.4%) |
| Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified (R00–R99) | 30 (1.1%) | 256 (9.7%) | 307 (9.6%) | 327 (15.7%) | 352 (12.6%) | 1272 (9.5%) |
| Injury, poisoning and certain other consequences of external causes (S00–T98) | 1 (0.0%) | 159 (6.0%) | 16 (0.5%) | 220 (10.6%) | 272 (9.7%) | 668 (5.0%) |
| External causes of morbidity and mortality (V01–Y98) | 1 (0.0%) | 17 (0.6%) | 1 (0.0%) | 39 (1.9%) | 32 (1.1%) | 90 (0.7%) |
| Factors influencing health status and contact with health services (Z00–Z99) | 11 (0.4%) | 4 (0.2%) | 2 (0.1%) | 10 (0.5%) | 34 (1.2%) | 61 (0.5%) |
| International Classification of Diseases for Oncology (M) | 5 (0.2%) | 31 (1.2%) | 7 (0.2%) | 27 (1.3%) | 150 (5.4%) | 220 (1.6%) |