Literature DB >> 31931008

Intracellular Neutralization of Ricin Toxin by Single-domain Antibodies Targeting the Active Site.

Michael J Rudolph1, Timothy F Czajka2, Simon A Davis3, Chi My Thi Nguyen3, Xiao-Ping Li4, Nilgun E Tumer4, David J Vance5, Nicholas J Mantis6.   

Abstract

The extreme potency of the plant toxin, ricin, is due to its enzymatic subunit, RTA, which inactivates mammalian ribosomes with near-perfect efficiency. Here we characterized, at the functional and structural levels, seven alpaca single-domain antibodies (VHHs) previously reported to recognize epitopes in proximity to RTA's active site. Three of the VHHs, V2A11, V8E6, and V2G10, were potent inhibitors of RTA in vitro and protected Vero cells from ricin when expressed as intracellular antibodies ("intrabodies"). Crystal structure analysis revealed that the complementarity-determining region 3 (CDR3) elements of V2A11 and V8E6 penetrate RTA's active site and interact with key catalytic residues. V2G10, by contrast, sits atop the enzymatic pocket and occludes substrate accessibility. The other four VHHs also penetrated/occluded RTA's active site, but lacked sufficient binding affinities to outcompete RTA-ribosome interactions. Intracellular delivery of high-affinity, single-domain antibodies may offer a new avenue in the development of countermeasures against ricin toxin.toxin, antibody, structure, intracellular.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Antibody; Intracellular; Structure; Toxin

Mesh:

Substances:

Year:  2020        PMID: 31931008      PMCID: PMC7066583          DOI: 10.1016/j.jmb.2020.01.006

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  49 in total

1.  Structure-based design and characterization of novel platforms for ricin and shiga toxin inhibition.

Authors:  Darcie J Miller; Kabyadi Ravikumar; Huafeng Shen; Jung-Keun Suh; Sean M Kerwin; Jon D Robertus
Journal:  J Med Chem       Date:  2002-01-03       Impact factor: 7.446

2.  ARP/wARP and automatic interpretation of protein electron density maps.

Authors:  Richard J Morris; Anastassis Perrakis; Victor S Lamzin
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

3.  Development of a quantitative RT-PCR assay to examine the kinetics of ribosome depurination by ribosome inactivating proteins using Saccharomyces cerevisiae as a model.

Authors:  Michael Pierce; Jennifer Nielsen Kahn; Jiachi Chiou; Nilgun E Tumer
Journal:  RNA       Date:  2010-11-23       Impact factor: 4.942

Review 4.  Camelid nanobodies: killing two birds with one stone.

Authors:  Aline Desmyter; Silvia Spinelli; Alain Roussel; Christian Cambillau
Journal:  Curr Opin Struct Biol       Date:  2015-01-19       Impact factor: 6.809

5.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Crystal structures of ricin toxin's enzymatic subunit (RTA) in complex with neutralizing and non-neutralizing single-chain antibodies.

Authors:  Michael J Rudolph; David J Vance; Jonah Cheung; Matthew C Franklin; Fiana Burshteyn; Michael S Cassidy; Ebony N Gary; Cristina Herrera; Charles B Shoemaker; Nicholas J Mantis
Journal:  J Mol Biol       Date:  2014-06-04       Impact factor: 5.469

7.  Camel single-domain antibody inhibits enzyme by mimicking carbohydrate substrate.

Authors:  T R Transue; E De Genst; M A Ghahroudi; L Wyns; S Muyldermans
Journal:  Proteins       Date:  1998-09-01

8.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

9.  The RNA N-glycosidase activity of ricin A-chain. The characteristics of the enzymatic activity of ricin A-chain with ribosomes and with rRNA.

Authors:  Y Endo; K Tsurugi
Journal:  J Biol Chem       Date:  1988-06-25       Impact factor: 5.157

Review 10.  Functional Assays for Measuring the Catalytic Activity of Ribosome Inactivating Proteins.

Authors:  Yijun Zhou; Xiao-Ping Li; Jennifer N Kahn; Nilgun E Tumer
Journal:  Toxins (Basel)       Date:  2018-06-14       Impact factor: 4.546

View more
  3 in total

1.  An intracellular nanobody targeting T4SS effector inhibits Ehrlichia infection.

Authors:  Wenqing Zhang; Mingqun Lin; Qi Yan; Khemraj Budachetri; Libo Hou; Ashweta Sahni; Hongyan Liu; Nien-Ching Han; Jeffrey Lakritz; Dehua Pei; Yasuko Rikihisa
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-04       Impact factor: 11.205

Review 2.  Current and future advances in fluorescence-based visualization of plant cell wall components and cell wall biosynthetic machineries.

Authors:  Brian T DeVree; Lisa M Steiner; Sylwia Głazowska; Felix Ruhnow; Klaus Herburger; Staffan Persson; Jozef Mravec
Journal:  Biotechnol Biofuels       Date:  2021-03-29       Impact factor: 6.040

3.  The structural basis of Salmonella A2B5 toxin neutralization by antibodies targeting the glycan-receptor binding subunits.

Authors:  Tri Nguyen; Angelene F Richards; Durga P Neupane; J Ryan Feathers; Yi-An Yang; Ji Hyun Sim; Haewon Byun; Sohyoung Lee; Changhwan Ahn; Greta Van Slyke; J Christopher Fromme; Nicholas J Mantis; Jeongmin Song
Journal:  Cell Rep       Date:  2021-09-07       Impact factor: 9.423

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.