| Literature DB >> 31929726 |
Vasiliki Chatziravdeli1, George N Katsaras1, George I Lambrou1.
Abstract
BACKGROUND: Microgravity (μG) negatively influences bone metabolism by affecting normal osteoblast and osteoclast function. μG effects on bone metabolism has been an extensive field of study in recent years, due to the challenges presented by space flight.Entities:
Keywords: Gene expression; Microarrays; Microgravity; Osteoblasts; Osteoclasts; Space
Year: 2019 PMID: 31929726 PMCID: PMC6935951 DOI: 10.2174/1389202920666190422142053
Source DB: PubMed Journal: Curr Genomics ISSN: 1389-2029 Impact factor: 2.236
Study characteristics for osteoblastic cell lines.
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| Hu | mouse | MC3T3-E1 | RWV | EARTH | 3h | Microarray(Agilent) | |||||||
| Wang 2016 | mouse | MC3T3-E1 | clinorotation | EARTH | 2d | Total RNA-cDNA-qRT-PCR | |||||||
| Chatani | medaka fish | OB cells | ISS | SPACE | 1-8d | HiSeq | |||||||
| Sun | mouse | MC3T3-E1 | clinorotation | EARTH | 2d | Total RNA-cDNA-qRT-PCR | |||||||
| Sun | mouse | MC3T3-E1 | clinorotation | EARTH | 2d, 3d | qPCR | |||||||
| Goyden | mouse | MC3T3-E1 | RCCS | EARTH | 7d | Total RNA-cDNA-qRT-PCR | |||||||
| Rucci | human | OB cells | HDBR | EARTH | 14d | Total RNA-cDNA | |||||||
| mouse | OB cells | HLS | EARTH | 21d | Total RNA-cDNA | ||||||||
| mouse | OB cells | BOTOx(quad, soleus, gastro, Plantaris) | EARTH | 21d | Total RNA-cDNA | ||||||||
| Hu | rat | OB cells(femur) | HLU | EARTH | 3w | Microarray(Agilent) | |||||||
| - | prOB | 2D-RWV | EARTH | 2d | Microarray(Agilent) | ||||||||
| Hu Li | Mouse | MC3T3-E1 | 3D-RPM | EARTH | 1d | RT-PCR & Real time PCR | |||||||
| Guignandon 2014 | human | MG-63 | FOTON-M3 | SPACE | 69h | Total RNa & real time PCR | |||||||
| Dai | human | OSE-MG-63 | clinostat | EARTH | 2d | Total RNA-qPCR | |||||||
| Blaber | mouse | OB cells | STS-131 | SPACE | 15d | qRT-PCR arrays (Qiagen) | |||||||
| prOB | RWV | EARTH | 2d | qRT-PCR arrays (Qiagen) | |||||||||
| Kapitonova | human | OB cells | ISS | SPACE | 10d | Total RNA-cDNA-RT PCR(Qiagen) | |||||||
| Shuang | mouse | femur | HLS | EARTH | 4w & 8w | qRT -PCR | |||||||
| mouse | 2T3 | RCCS | EARTH | 2d | qRT -PCR | ||||||||
| Qian | human | MG-63 | LG-HMF | EARTH | 1d | Microarray(Affymetrix) | |||||||
| Capulli | mouse | OB cells | RWV | EARTH | 5d | Microarray(Affymetrix)-real time PCR | |||||||
| Makihira | mouse | MC3T3-E1 | RPM | EARTH | 3d & 7d | qRT-PCR | |||||||
| Kumei | rat | OB cells | space shuttle | SPACE | 4d & 5d | RT-PCR | |||||||
| Bucaro | mouse | MC3T3-E1 | HARV(CLINOSTAT) | EARTH | 1d & 5d & 14d | RT-PCR | |||||||
| Rucci | mouse | OB cells | RWV | EARTH | 1d | RT-PCR | |||||||
| Patel | mouse | 2T3 | RWV | EARTH | 3d | Microarray(Affymetrix) | |||||||
| Hughes | mouse | MC3T3-E1 | STS-76 | SPACE | 24h | RT-PCR | |||||||
| Kumei | rat | OB cells | space shuttle | SPACE | 4d & 5d | RT-PCR | |||||||
| Pardo | mouse | 2T3 | RPM | EARTH | 3d | Microarray(Amersham) | |||||||
| Bucaro | mouse | MC3T3-E1 | RCCS | EARTH | 5d | RT-PCR | |||||||
| Kumei | rat | OB cells | space shuttle | SPACE | 4d & 5d | RT-PCR | |||||||
| Saito | mouse | MC3T3-E1 | clinostat | EARTH | 3d | RT-PCR | |||||||
| Nakamura | human | OB cells | clinostat | EARTH | 12-24-48-96h | RT-PCR | |||||||
| Kumei | rat | OB cells | space flight | SPACE | 4d & 5d | qRT-PCR | |||||||
| Kumei | rat | OB cells | space flight | SPACE | 4d & 5d | qRT-PCR | |||||||
| Ontiveros and McCabe 2003 [ | mouse | MC3T3-E1 | RWV | EARTH | 1d | Total RNA-Real time PCR | |||||||
| Kumei | rat | OB cells | space flight | SPACE | 5d +6d | qRT-PCR | |||||||
| Rucci | rat | ROS.SMER# 14 | RWV | EARTH | 2d | PT-PCR | |||||||
| Landis | chicken calvaria | OB cells | STS-59 | SPACE | 3d & 5d | Total RNA-cDNA(northern blot) | |||||||
| Sato | rat | MC3T3-E1/ HeLa cells | clinostat | EARTH | 2d | NORTHERN BLOT | |||||||
| - | TR-1A6 (rocket) | SPACE | 6min | RT-PCR | |||||||||
| Hughes | rat | MC3T3-E1 | STS-76 | SPACE | 29h | RT-PCR | |||||||
| Carmeliet | human | MG-63 | FOTON-10 | SPACE | 9d | RT-PCR, Northern blot | |||||||
| Kumei | rat | OB cells | STS-65 | SPACE | 5d | qRT-PCR | |||||||
| Bikle | rat | OB cells | HLS | EARTH | 2w | Northern blot | |||||||
| - | OB cells(tibia) | STS-54 | SPACE | 6d | Northern blot | ||||||||
(RWV: Rotating Wall Vessel, HARV: High Aspect Rotating Vessel, HLS: Hind-Limb Suspension, ISS: International Space Station, RCCS: Rotary Cell Culture System, HDBR: Head Down Bed Rest, LG-HMF: Large Gradient High Magnetic Field, RPM: Random Positioning Machine, OB: Osteoblast, RT-PCR: Reverse Transcription Polymerase Chain Reaction, HiSeq DNA: High Sequencing DNA, HLU: Hind-Limb Unloading, 2D: two Dimension, 3D: three Dimension, d: Days, h: Hours, w: Weeks, min: Minutes, qRT-PCR: Quantative: RT-PCR, cDNA: Complementary DNA).
Study characteristics for osteoclastic cell lines.
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| Ethiraj | mouse | RAW264.7 | RCCS | EARTH | 24h | RT-PCR |
| Shanmugarajan | mouse | RAW264.7 | RWV | EARTH | 5d | RT-PCR |
| Sambandam | mouse | RAW264.7 | RCCS | EARTH | 24h | RT-PCR |
| Chatani | medaka fish | OSC cells | ISS | SPACE | 2d | HiSeq |
| Chatani | medaka fish | OSC cells | ISS | SPACE | 60d | Whole transcriptome analysis |
| Yu-Long | mouse | RAW264.7 | LG-HMF | EARTH | 48h | RT-PCR |
| Sambandam | mouse | RAW264.7 | RCCS | EARTH | 24h | RT-PCR |
| Saxena | mouse | RAW264.7 | RCCS | EARTH | 24h | RT-PCR |
| Sambandam | mouse | RAW264.7 | RCCS | EARTH | 24h | Microarray(Agilent) |
| Tamma | mouse | (marrow macrophages) OSTEO | FOTON -M3 | SPACE | 10d | RT-PCR |
| mouse | PITS (mature OSC) | - | SPACE | 4d | RT-PCR | |
| Makihira | mouse | RAW264.7 | RPM | EARTH | 7d | RT-PCR |
(RCCS: Rotary Cell Culture System, RWV: Rotating Wall Vessel, ISS: International Space Station, LG-HMF: Large Gradient High Magnetic Field, HARV: High Aspect Rotating Vessel, HLS: Hind-Limb Suspension, RPM: Random Positioning Machine, OB: Osteoblast, RT-PCR: Reverse Transcription Polymerase Chain Reaction, d: days, h: hours, HiSeq: High Sequencing).
Functional annotations of genes reported with respect to osteoblastogenesis (OBgenesis), osteoblast (OBS) differentiation maturation and osteoblast mineralization.
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| Makihira | U (max d3) | U | - | U (d1) | U (d7 little) | U (steady) | - | - | - | - | - |
| Bucaro | (ND) | - | D | - | - | (ND) | (ND)- | - | - | (ND) | - |
| Bucaro | D | - | D | - | - | D | D | - | - | - | - |
| Ontiveros and McCabe 2003 [ | D | - | D | - | - | - | D | - | - | - | - |
| Hu | D (until d3) | D | D | - | - | - | - | - | - | - | - |
| Shuang | D | - | D | - | - | - | D | - | - | - | - |
| Pardo | D | - | D | - | - | - | - | D | D | - | - |
| Patel | D | - | D | - | - | - | - | D | D | - | - |
| Capuli | D | - | - | U | D | - | - | - | - | - | - |
| Bikle | - | - | U (max2d) | - | - | - | D (max5d) | - | - | - | - |
| Kapitonova | - | - | U | - | - | U (NS) | U | - | - | NS | NS |
| Carmeliet | - | - | D | - | - | (D) | D min answer to stimulus. | - | - | - | - |
| Rucci | - | - | U | - | - | - | U | - | - | U | NA |
| Rucci | NA | NA | NA | U | D | NA | NA | - | - | NA | - |
| Landis | - | - | - | - | - | D | D | - | - | - | - |
| Dai | D (+after BMP2 stimulus) | - | - | - | - | - | - | - | - | - | - |
| Saito | - | - | - | - | - | D | - | - | - | - | - |
| Chatani | - | U | - | - | - | U | U | - | - | - | - |
| Hughes | - | - | - | - | - | - | D | - | - | - | - |
| Hughes | - | - | - | - | - | - | U | - | - | - | - |
| Kumei | - | - | - | - | - | - | - | - | - | D | U (little) |
(d: day, NS: Not Significant, ND: No Difference, NA: Not Affected, max: Maximum, min: Minimum, D: Down, U: Up, Omd: Osteomodulin, OP: Osteopontin, ON: Osteonectin, Pth1r: Parathyroid Hormone Receptor 1, CollaI: Collagen Ia, ALP: Alkaline Phospahtase, OPG: Osteoprotegerine, RANKL: Receptor Activator of NF-κB Ligant, OCN: Osteocalcin).
Expression of cytoskeletal genes.
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| Dai | - | - | - | - | - | - | - | - | D | - | - | - | - |
| Qian | U | U | U | U | - | U | U | - | - | - | - | - | - |
| Shuang | - | - | - | - | U | - | - | - | - | - | - | - | - |
| Guignandon | - | - | - | - | - | - | - | - | - | - | - | - | D |
| Kumei | - | - | - | - | - | - | - | - | - | - | - | D | - |
| Kumei | - | - | - | - | - | - | - | - | - | D (5d) | - | - | - |
(U: Up, D: Down, d: Days, max: Maximum).
Expression of apoptosis- and proliferation-related genes.
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| - | Bax(+)/ | P53(+)/ | ERK ½ (-) | iNOS(+)/GTPCH | Caspase8 | Caspase3 | XIAp | HSP70 | PAF-R(-) | CD44 | Akt(-) | c-fos | c-jun | c-myc | MAPK |
| Buccaro | ND | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Hughes | D/D | - | - | - | - | - | - | - | - | - | - | - | - | D | - |
| Rucci | ND | ND | - | - | ND | - | - | - | - | - | - | - | - | - | - |
| Rucci | - | - | U | - | - | - | - | - | - | - | - | - | - | - | - |
| Nakamura | U/U | - | - | - | ND | ND | U | - | - | - | - | - | - | - | - |
| Blaber | - | D/U | - | - | - | - | - | - | - | - | ND | D | - | - | D |
| Kumei | - | - | - | U/U | - | - | - | D | U | - | - | - | - | - | - |
| Sato | - | - | - | - | - | - | - | - | - | - | - | D | ND | - | ND |
| Chatani | - | - | - | - | - | - | - | - | - | - | - | U | U | - | - |
| Kumei | - | - | U | - | - | - | - | - | - | - | - | - | - | - | U |
| Kumei | - | - | U | - | - | - | - | - | U | U | - | - | - | - | U |
| Buccaro | D | - | - | - | - | - | - | - | - | - | D | - | - | - | - |
(ND: No Difference, U: Up, D: Down).
Expression of cytokine- and morphogenesis-related genes.
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| Blaber | - | - | U | - | - | - | - | - | |||||||
| Hughes | - | - | - | D | - | U | - | - | |||||||
| Kumei | U | - | - | - | - | U | - | - | |||||||
| Rucci | U | - | - | - | - | - | U | ND | |||||||
| Capulli | U | U | - | - | - | - | - | - | |||||||
| Rucci | - | U | - | - | - | - | - | - | |||||||
| Rucci | - | U | - | - | - | - | - | - | |||||||
| Patel | - | - | - | - | - | - | D | - | |||||||
| Saito | - | - | - | - | - | - | - | - | |||||||
| Kumei | - | - | - | - | - | U | - | - | |||||||
| Kumei | - | - | - | - | - | - | - | - | |||||||
| Kapitonova | D | - | - | - | - | - | - | - | |||||||
| Hughes | - | - | D | D | ND | - | - | - | |||||||
| Pardo | - | - | - | - | - | - | D | - | |||||||
(d: Days, ND: No Difference, U: Up, D: Down, IL: Interleukin, BMP: Bone Morphogenetic Protein, Cox: Cyclooxigenase, Lcn2: Lipocalin 2).
Expression of cytokine- and morphogenesis-related genes.
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| Osteoclast Markers | RANK | - | - | - | - | - | - | U (with RANKL) | - | - | - | - |
| TRAP | - | U | - | U | - | Suppr | - | - | U | - | - | |
| MMP-9 | - | - | - | U | - | U | - | U | U | - | - | |
| Cathepsin-K | - | - | - | U | - | Suppr | U | U | U | - | - | |
| CaIR | - | - | - | - | - | - | U | - | U | - | - | |
| Fusion- Differentiation-Proliferation | Syncytin-A | U | - | - | - | - | - | - | - | - | - | - |
| Syncytin-B | ND | - | - | - | - | - | - | - | - | - | - | |
| Dcstamp | - | U | U | - | - | - | - | - | - | U | - | |
| Ocstamp | - | U | U | - | - | - | - | - | - | - | - | |
| CCN2/CTGF | - | U | - | - | - | - | - | - | - | - | - | |
| TRAF6 | - | - | U | - | - | - | - | - | - | - | - | |
| TRAIL (TNF related) | - | - | U | - | - | - | - | - | - | - | - | |
| Transcription Factors | Runx2 | - | - | - | - | - | Suppr | - | - | - | - | - |
| NFATc1 | - | - | - | - | - | U | U(without RANKL) | - | - | - | - | |
| Pcreb | - | - | - | - | - | - | - | U | - | - | - | |
| Adhesion | Podoplanin | - | - | - | - | - | - | - | U | - | - | - |
| Β-integrin | - | - | - | - | - | - | - | U | U | U (without RANKL) | - | |
| Signal | S100A8 | - | - | - | - | - | - | - | U | - | - | - |
| Nucleus & mitochondrial | c-fos | - | - | - | U | - | - | - | - | - | - | - |
| Jun-b-like | - | - | - | U | - | - | - | - | - | - | - | |
| Pai-1 | - | - | - | U | - | - | - | - | - | - | - | |
| ddit4 | - | - | - | U | U | - | - | - | - | - | - | |
| Fkbp5 | - | - | - | - | U | - | - | - | - | - | - | |
| Tsc22d3 | - | - | - | U | - | - | - | - | - | - | - | |
| Autophagy | LC3 | - | - | - | - | - | - | - | - | - | - | U |
| Atg5 | - | - | - | - | - | - | - | - | - | - | U |
(Suppr: Suppressed, ND: No Difference, U: Up).