Literature DB >> 31924744

Insights into the energy landscapes of chromosome organization proteins from coevolutionary sequence variation and structural modeling.

Ronald M Levy1,2.   

Abstract

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Year:  2020        PMID： 31924744      PMCID： PMC7007567          DOI： 10.1073/pnas.1921727117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  13 in total

1.  Direct-coupling analysis of residue coevolution captures native contacts across many protein families.

Authors:  Faruck Morcos; Andrea Pagnani; Bryan Lunt; Arianna Bertolino; Debora S Marks; Chris Sander; Riccardo Zecchina; José N Onuchic; Terence Hwa; Martin Weigt
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-21       Impact factor: 11.205

2.  Electrostatics, structure prediction, and the energy landscapes for protein folding and binding.

Authors:  Min-Yeh Tsai; Weihua Zheng; D Balamurugan; Nicholas P Schafer; Bobby L Kim; Margaret S Cheung; Peter G Wolynes
Journal:  Protein Sci       Date:  2015-08-08       Impact factor: 6.725

3.  Deciphering the structure of the condensin protein complex.

Authors:  Dana Krepel; Ryan R Cheng; Michele Di Pierro; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-01       Impact factor: 11.205

4.  Biochemistry. Integrative structural biology.

Authors:  Andrew B Ward; Andrej Sali; Ian A Wilson
Journal:  Science       Date:  2013-02-22       Impact factor: 47.728

Review 5.  Potts Hamiltonian models of protein co-variation, free energy landscapes, and evolutionary fitness.

Authors:  Ronald M Levy; Allan Haldane; William F Flynn
Journal:  Curr Opin Struct Biol       Date:  2016-11-18       Impact factor: 6.809

6.  Braiding topology and the energy landscape of chromosome organization proteins.

Authors:  Dana Krepel; Aram Davtyan; Nicholas P Schafer; Peter G Wolynes; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-30       Impact factor: 11.205

7.  How are DNAs woven into chromosomes?

Authors:  Kim Nasmyth
Journal:  Science       Date:  2017-11-03       Impact factor: 47.728

8.  Three-dimensional topology of the SMC2/SMC4 subcomplex from chicken condensin I revealed by cross-linking and molecular modelling.

Authors:  Helena Barysz; Ji Hun Kim; Zhuo Angel Chen; Damien F Hudson; Juri Rappsilber; Dietlind L Gerloff; William C Earnshaw
Journal:  Open Biol       Date:  2015-02       Impact factor: 6.411

9.  Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.

Authors:  Sergey Ovchinnikov; Hetunandan Kamisetty; David Baker
Journal:  Elife       Date:  2014-05-01       Impact factor: 8.140

10.  Structure of Full-Length SMC and Rearrangements Required for Chromosome Organization.

Authors:  Marie-Laure Diebold-Durand; Hansol Lee; Laura B Ruiz Avila; Haemin Noh; Ho-Chul Shin; Haeri Im; Florian P Bock; Frank Bürmann; Alexandre Durand; Alrun Basfeld; Sihyun Ham; Jérôme Basquin; Byung-Ha Oh; Stephan Gruber
Journal:  Mol Cell       Date:  2017-07-06       Impact factor: 17.970
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