Literature DB >> 31923397

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.

David J Clark, Saravana M Dhanasekaran, Francesca Petralia, Jianbo Pan, Xiaoyu Song, Yingwei Hu, Felipe da Veiga Leprevost, Boris Reva, Tung-Shing M Lih, Hui-Yin Chang, Weiping Ma, Chen Huang, Christopher J Ricketts, Lijun Chen, Azra Krek, Yize Li, Dmitry Rykunov, Qing Kay Li, Lin S Chen, Umut Ozbek, Suhas Vasaikar, Yige Wu, Seungyeul Yoo, Shrabanti Chowdhury, Matthew A Wyczalkowski, Jiayi Ji, Michael Schnaubelt, Andy Kong, Sunantha Sethuraman, Dmitry M Avtonomov, Minghui Ao, Antonio Colaprico, Song Cao, Kyung-Cho Cho, Selim Kalayci, Shiyong Ma, Wenke Liu, Kelly Ruggles, Anna Calinawan, Zeynep H Gümüş, Daniel Geiszler, Emily Kawaler, Guo Ci Teo, Bo Wen, Yuping Zhang, Sarah Keegan, Kai Li, Feng Chen, Nathan Edwards, Phillip M Pierorazio, Xi Steven Chen, Christian P Pavlovich, A Ari Hakimi, Gabriel Brominski, James J Hsieh, Andrzej Antczak, Tatiana Omelchenko, Jan Lubinski, Maciej Wiznerowicz, W Marston Linehan, Christopher R Kinsinger, Mathangi Thiagarajan, Emily S Boja, Mehdi Mesri, Tara Hiltke, Ana I Robles, Henry Rodriguez, Jiang Qian, David Fenyö, Bing Zhang, Li Ding, Eric Schadt, Arul M Chinnaiyan, Zhen Zhang, Gilbert S Omenn, Marcin Cieslik, Daniel W Chan, Alexey I Nesvizhskii, Pei Wang, Hui Zhang.   

Abstract

Entities:  

Year:  2020        PMID： 31923397     DOI： 10.1016/j.cell.2019.12.026

Source DB:  PubMed          Journal:  Cell        ISSN： 0092-8674            Impact factor:   41.582


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  20 in total

1.  Identification of DNA methylation patterns and biomarkers for clear-cell renal cell carcinoma by multi-omics data analysis.

Authors:  Pengfei Liu; Weidong Tian
Journal:  PeerJ       Date:  2020-08-03       Impact factor: 2.984

2.  LncRNA HIF1A-AS2 accelerates malignant phenotypes of renal carcinoma by modulating miR-30a-5p/SOX4 axis as a ceRNA.

Authors:  Mingwei Chen; Xuedong Wei; Xiu Shi; Le Lu; Guangbo Zhang; Yuhua Huang; Jianquan Hou
Journal:  Cancer Biol Med       Date:  2021-03-12       Impact factor: 4.248

3.  A community effort to identify and correct mislabeled samples in proteogenomic studies.

Authors:  Seungyeul Yoo; Zhiao Shi; Bo Wen; SoonJye Kho; Renke Pan; Hanying Feng; Hong Chen; Anders Carlsson; Patrik Edén; Weiping Ma; Michael Raymer; Ezekiel J Maier; Zivana Tezak; Elaine Johanson; Denise Hinton; Henry Rodriguez; Jun Zhu; Emily Boja; Pei Wang; Bing Zhang
Journal:  Patterns (N Y)       Date:  2021-05-07

4.  Intratumoral CXCL13+CD8+T cell infiltration determines poor clinical outcomes and immunoevasive contexture in patients with clear cell renal cell carcinoma.

Authors:  Siyuan Dai; Han Zeng; Zhaopei Liu; Kaifeng Jin; Wenbin Jiang; Zewei Wang; Zhiyuan Lin; Ying Xiong; Jiajun Wang; Yuan Chang; Qi Bai; Yu Xia; Li Liu; Yu Zhu; Le Xu; Yang Qu; Jianming Guo; Jiejie Xu
Journal:  J Immunother Cancer       Date:  2021-02       Impact factor: 13.751

5.  Proteomic signatures of 16 major types of human cancer reveal universal and cancer-type-specific proteins for the identification of potential therapeutic targets.

Authors:  Yangying Zhou; T Mamie Lih; Jianbo Pan; Naseruddin Höti; Mingming Dong; Liwei Cao; Yingwei Hu; Kyung-Cho Cho; Shao-Yung Chen; Rodrigo Vargas Eguez; Edward Gabrielson; Daniel W Chan; Hui Zhang; Qing Kay Li
Journal:  J Hematol Oncol       Date:  2020-12-07       Impact factor: 17.388

6.  ZMYND8 preferentially binds phosphorylated EZH2 to promote a PRC2-dependent to -independent function switch in hypoxia-inducible factor-activated cancer.

Authors:  Bo Tang; Rui Sun; Dejie Wang; Haoyue Sheng; Ting Wei; Liguo Wang; Jun Zhang; Thai H Ho; Lu Yang; Qiang Wei; Haojie Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-23       Impact factor: 11.205

7.  Evaluation of Differential Peptide Loading on Tandem Mass Tag-Based Proteomic and Phosphoproteomic Data Quality.

Authors:  James A Sanford; Yang Wang; Joshua R Hansen; Marina A Gritsenko; Karl K Weitz; Tyler J Sagendorf; Cristina E Tognon; Vladislav A Petyuk; Wei-Jun Qian; Tao Liu; Brian J Druker; Karin D Rodland; Paul D Piehowski
Journal:  J Am Soc Mass Spectrom       Date:  2021-11-23       Impact factor: 3.109

8.  Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens.

Authors:  Jeffrey R Whiteaker; Rachel A Lundeen; Lei Zhao; Regine M Schoenherr; Aura Burian; Dongqing Huang; Ulianna Voytovich; Tao Wang; Jacob J Kennedy; Richard G Ivey; Chenwei Lin; Oscar D Murillo; Travis D Lorentzen; Mathangi Thiagarajan; Simona Colantonio; Tessa W Caceres; Rhonda R Roberts; Joseph G Knotts; Joshua J Reading; Jan A Kaczmarczyk; Christopher W Richardson; Sandra S Garcia-Buntley; William Bocik; Stephen M Hewitt; Karen E Murray; Nhan Do; Mary Brophy; Stephen W Wilz; Hongbo Yu; Samuel Ajjarapu; Emily Boja; Tara Hiltke; Henry Rodriguez; Amanda G Paulovich
Journal:  Front Immunol       Date:  2021-11-11       Impact factor: 8.786

9.  LncRNA RCAT1 promotes tumor progression and metastasis via miR-214-5p/E2F2 axis in renal cell carcinoma.

Authors:  Renbo Guo; Benkui Zou; Yiran Liang; Jiasheng Bian; Jian Xu; Qian Zhou; Chao Zhang; Tao Chen; Mingshan Yang; Huansheng Wang; Fajun Pei; Zhonghua Xu
Journal:  Cell Death Dis       Date:  2021-07-09       Impact factor: 8.469

10.  A Risk Signature with Autophagy-Related Long Noncoding RNAs for Predicting the Prognosis of Clear Cell Renal Cell Carcinoma: Based on the TCGA Database and Bioinformatics.

Authors:  Yundong Xuan; Weihao Chen; Kan Liu; Yu Gao; Shidong Zuo; Baojun Wang; Xin Ma; Xu Zhang
Journal:  Dis Markers       Date:  2021-05-07       Impact factor: 3.434
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