| Literature DB >> 31921459 |
Md Azharul Arafath1, Huey Chong Kwong2, Farook Adam3, Md Mohiuddin1, Md Sohug Sarker1, Mohammad Salim1, Md Mahbubul Alam1.
Abstract
The mol-ecule of the title compound, C28H22N4O9, exhibits crystallographically imposed twofold rotational symmetry, with a dihedral angle of 66.0 (2)° between the planes of the two central benzene rings bounded to the central oxygen atom. The dihedral angle between the planes of the central benzene ring and the terminal phenol ring is 4.9 (2)°. Each half of the mol-ecule exhibits an imine E configuration. An intra-molecular O-H⋯N hydrogen bond is present. In the crystal, the mol-ecules are linked into layers parallel to the ab plane via C-H⋯O hydrogen bonds. The crystal studied was refined as a two-component pseudomerohedral twin. © Arafath et al. 2020.Entities:
Keywords: crystal structure; intermolecular interaction; oxybis Schiff base
Year: 2020 PMID: 31921459 PMCID: PMC6944087 DOI: 10.1107/S2056989019016852
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. Intramolecular hydrogen bonds are shown as dashed lines. Atoms with the label suffix A are generated by the symmetry operation −x, y, − z.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H1 | 0.85 (9) | 1.81 (10) | 2.591 (6) | 153 (7) |
| C7—H7 | 0.95 | 2.54 | 3.470 (7) | 167 |
| C13—H13 | 0.95 | 2.48 | 3.404 (7) | 165 |
Symmetry code: (i) .
Figure 2Partial packing diagram for the title compound, showing intermolecular hydrogen bonds (cyan dotted lines). Hydrogen atoms not involved in hydrogen bonding are omitted for clarity. Symmetry codes: (i) − + x, + y, z; (ii) −1 + x, 1 + y, z.
Figure 3Structural fragment for the CSD search.
Selected dihedral and torsion angles (°)
Dihedral 1 is the dihedral angle between the planes of the central benzene rings. Dihedral 2 is the dihedral angle between the planes of the central and terminal benzene rings.
| Compound |
| Dihedral 1 | Dihedral 2 | C6—C7—N1—C8 |
|---|---|---|---|---|
| (I) | 4-methoxy-2-nitrophenol | 66.0 (2) | 4.9 (2), 4.9 (2) | −177.7 (4), −177.7 (4) |
| DICKUW (Chu & Huang, 2007 | 2,4-di- | 73.8 | 4.8, 35.5 | 178.2, 177.2 |
| DICLAD (Chu & Huang, 2007 | 2-( | 73.8 | 47.9, 46.3 | 175.2, −179.9 |
| GIFCEG (Arafath | 2-methylphenol | 59.5 | 36.0, 31.5 | 178.3, 179.0 |
| HUDJEW (Lee & Lee, 2009 | 4-nitrophenyl | 75.7 | 53.0, 18.0 | −174.0, 179.2 |
| NATWEM (Khalaji | 2,3,4-trimethoxyphenyl | 84.8 | 57.6, 73.1 | −179.2, −175.7 |
| PEHGOA (Kadu | phenyl | 59.8 | 8.8, 6.0 | −179.9, 179.8 |
| PEHHAN (Kadu | 4-methoxyphenyl | 60.1 | 5.3, 5.3 | −179.3, −179.3 |
| RIZFEM (Xu | 2-methoxyphenol | 69.2 | 24.3, 24.3 | −180.0, −180.0 |
| TOWSOP (Kaabi | 3-(diethylamino)phenol | 65.7 | 41.4, 30.6 | −173.1, −176.5 |
| UNUFEP (Shahverdizadeh & Tiekink, 2011 | phenol | 54.6 | 51.6, 51.6 | 173.5, 173.4 |
| WEFLUQ (Krishna | naphthalen-2-ol | 75.1/70.1 | 7.7, 9.9/6.1, 19.4 | 176.5, 177.6/-179.3, −172.9 |
| WIGPOT (Haffar | naphthalen-2-ol | 74.6/69.9 | 7.7. 9.9/19.6, 5.8 | 177.2, 176.3/ −172.9, −178.6 |
Note: there is more than one data set for compounds WEFLUQ and WIGPOT because there is more than one independent molecule in their asymmetric units.
Figure 4Reaction scheme for the synthesis of the title compound.
Experimental details
| Crystal data | |
| Chemical formula | C28H22N4O9 |
|
| 558.49 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 15.954 (4), 5.4599 (12), 28.397 (6) |
| β (°) | 92.299 (5) |
|
| 2471.7 (10) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.11 |
| Crystal size (mm) | 0.38 × 0.24 × 0.14 |
| Data collection | |
| Diffractometer | Bruker APEX DUO CCD area detector |
| Absorption correction | Multi-scan ( |
|
| 0.879, 0.956 |
| No. of measured, independent and observed [ | 35811, 2830, 2591 |
|
| 0.038 |
| (sin θ/λ)max (Å−1) | 0.650 |
| Refinement | |
|
| 0.100, 0.353, 1.15 |
| No. of reflections | 2830 |
| No. of parameters | 192 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.31, −0.31 |
Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2013 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2006 ▸) and PLATON (Spek, 2009 ▸).
| C28H22N4O9 | |
| Monoclinic, | Mo |
| Cell parameters from 9905 reflections | |
| θ = 3–31° | |
| µ = 0.11 mm−1 | |
| β = 92.299 (5)° | |
| Block, purple | |
| 0.38 × 0.24 × 0.14 mm |
| Bruker APEX DUO CCD area detector diffractometer | 2830 independent reflections |
| Radiation source: fine-focus sealed tube | 2591 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.5°, θmin = 0.7° |
| Absorption correction: multi-scan (SADABS; Bruker, 2012) | |
| 35811 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2830 reflections | Δρmax = 0.31 e Å−3 |
| 192 parameters | Δρmin = −0.31 e Å−3 |
| Experimental. The following wavelength and cell were deduced by SADABS from the direction cosines etc. They are given here for emergency use only: CELL 0.71095 5.463 8.443 28.418 92.106 89.981 108.897 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refined as a 2-component twin. |
| O1 | 0.000000 | −0.2692 (9) | 0.250000 | 0.0444 (13) | |
| O2 | 0.4044 (2) | 0.9524 (8) | 0.47761 (16) | 0.0525 (11) | |
| O3 | 0.4346 (3) | 0.1480 (8) | 0.36154 (14) | 0.0475 (10) | |
| O4 | 0.6359 (2) | 0.4545 (9) | 0.43220 (19) | 0.0664 (14) | |
| O5 | 0.5853 (3) | 0.1292 (9) | 0.4007 (2) | 0.0710 (15) | |
| N1 | 0.2747 (2) | 0.1732 (8) | 0.34224 (14) | 0.0371 (9) | |
| N2 | 0.5771 (3) | 0.3336 (9) | 0.41607 (16) | 0.0417 (10) | |
| C1 | 0.3380 (3) | 0.6629 (9) | 0.42249 (18) | 0.0364 (10) | |
| H1A | 0.284746 | 0.739136 | 0.424432 | 0.044* | |
| C2 | 0.4061 (3) | 0.7544 (9) | 0.44839 (17) | 0.0355 (10) | |
| C3 | 0.4833 (3) | 0.6438 (9) | 0.44506 (17) | 0.0365 (10) | |
| H3A | 0.530272 | 0.707394 | 0.462653 | 0.044* | |
| C4 | 0.4934 (3) | 0.4407 (9) | 0.41635 (16) | 0.0337 (10) | |
| C5 | 0.4255 (3) | 0.3424 (9) | 0.38929 (16) | 0.0332 (10) | |
| C6 | 0.3471 (3) | 0.4586 (9) | 0.39343 (16) | 0.0337 (10) | |
| C7 | 0.2723 (3) | 0.3645 (9) | 0.36861 (17) | 0.0366 (10) | |
| H7A | 0.220289 | 0.446315 | 0.371966 | 0.044* | |
| C8 | 0.2016 (3) | 0.0754 (9) | 0.31932 (16) | 0.0335 (10) | |
| C9 | 0.2115 (3) | −0.1371 (9) | 0.29336 (17) | 0.0366 (10) | |
| H9A | 0.265646 | −0.208522 | 0.291709 | 0.044* | |
| C10 | 0.1439 (3) | −0.2462 (9) | 0.26992 (16) | 0.0369 (10) | |
| H10A | 0.151248 | −0.392646 | 0.252498 | 0.044* | |
| C11 | 0.0657 (3) | −0.1405 (9) | 0.27200 (16) | 0.0349 (10) | |
| C12 | 0.0535 (3) | 0.0722 (9) | 0.29753 (18) | 0.0395 (11) | |
| H12A | −0.000735 | 0.142841 | 0.298889 | 0.047* | |
| C13 | 0.1217 (3) | 0.1799 (9) | 0.32098 (17) | 0.0386 (11) | |
| H13A | 0.114209 | 0.326303 | 0.338386 | 0.046* | |
| C14 | 0.3252 (3) | 1.0498 (11) | 0.4876 (2) | 0.0477 (13) | |
| H14A | 0.332369 | 1.185096 | 0.510095 | 0.072* | |
| H14B | 0.290647 | 0.921682 | 0.501263 | 0.072* | |
| H14C | 0.297545 | 1.110264 | 0.458451 | 0.072* | |
| H1O3 | 0.386 (6) | 0.117 (15) | 0.350 (3) | 0.08 (3)* |
| O1 | 0.047 (3) | 0.029 (2) | 0.055 (3) | 0.000 | −0.023 (2) | 0.000 |
| O2 | 0.0300 (17) | 0.054 (2) | 0.073 (3) | 0.0037 (16) | −0.0050 (16) | −0.031 (2) |
| O3 | 0.0378 (19) | 0.054 (2) | 0.050 (2) | 0.0037 (16) | −0.0020 (15) | −0.0231 (18) |
| O4 | 0.0290 (18) | 0.074 (3) | 0.095 (3) | 0.0049 (19) | −0.013 (2) | −0.024 (3) |
| O5 | 0.044 (2) | 0.069 (3) | 0.099 (4) | 0.018 (2) | −0.008 (2) | −0.039 (3) |
| N1 | 0.0291 (18) | 0.043 (2) | 0.039 (2) | −0.0034 (16) | −0.0033 (15) | −0.0025 (17) |
| N2 | 0.0296 (19) | 0.052 (2) | 0.044 (2) | 0.0046 (18) | 0.0000 (16) | −0.0073 (19) |
| C1 | 0.027 (2) | 0.035 (2) | 0.047 (2) | 0.0005 (17) | −0.0033 (18) | −0.003 (2) |
| C2 | 0.030 (2) | 0.037 (2) | 0.039 (2) | −0.0011 (18) | 0.0016 (17) | −0.0075 (19) |
| C3 | 0.027 (2) | 0.041 (2) | 0.042 (2) | −0.0031 (18) | −0.0018 (17) | −0.006 (2) |
| C4 | 0.0241 (19) | 0.041 (2) | 0.036 (2) | 0.0020 (17) | −0.0006 (16) | −0.0026 (18) |
| C5 | 0.030 (2) | 0.037 (2) | 0.033 (2) | −0.0002 (18) | 0.0015 (16) | −0.0051 (18) |
| C6 | 0.028 (2) | 0.040 (2) | 0.033 (2) | −0.0040 (18) | −0.0020 (16) | −0.0031 (18) |
| C7 | 0.027 (2) | 0.043 (3) | 0.040 (2) | −0.0021 (18) | −0.0027 (17) | −0.003 (2) |
| C8 | 0.031 (2) | 0.037 (2) | 0.032 (2) | −0.0019 (18) | −0.0028 (16) | 0.0004 (18) |
| C9 | 0.034 (2) | 0.036 (2) | 0.039 (2) | 0.0035 (18) | −0.0025 (18) | −0.0007 (19) |
| C10 | 0.042 (2) | 0.033 (2) | 0.035 (2) | 0.0023 (19) | −0.0030 (18) | −0.0017 (18) |
| C11 | 0.039 (2) | 0.034 (2) | 0.032 (2) | −0.0052 (18) | −0.0086 (17) | 0.0028 (18) |
| C12 | 0.034 (2) | 0.037 (2) | 0.046 (3) | 0.0053 (19) | −0.0107 (19) | −0.004 (2) |
| C13 | 0.037 (2) | 0.038 (2) | 0.041 (2) | 0.0022 (19) | −0.0072 (18) | −0.011 (2) |
| C14 | 0.037 (2) | 0.046 (3) | 0.060 (3) | 0.007 (2) | 0.003 (2) | −0.017 (3) |
| O1—C11i | 1.389 (5) | C4—C5 | 1.409 (6) |
| O1—C11 | 1.389 (5) | C5—C6 | 1.412 (6) |
| O2—C2 | 1.364 (6) | C6—C7 | 1.456 (6) |
| O2—C14 | 1.410 (6) | C7—H7A | 0.9500 |
| O3—C5 | 1.333 (6) | C8—C9 | 1.387 (7) |
| O3—H1O3 | 0.85 (9) | C8—C13 | 1.398 (6) |
| O4—N2 | 1.221 (6) | C9—C10 | 1.380 (7) |
| O5—N2 | 1.207 (6) | C9—H9A | 0.9500 |
| N1—C7 | 1.287 (6) | C10—C11 | 1.379 (7) |
| N1—C8 | 1.418 (6) | C10—H10A | 0.9500 |
| N2—C4 | 1.458 (6) | C11—C12 | 1.387 (7) |
| C1—C2 | 1.381 (6) | C12—C13 | 1.384 (6) |
| C1—C6 | 1.398 (7) | C12—H12A | 0.9500 |
| C1—H1A | 0.9500 | C13—H13A | 0.9500 |
| C2—C3 | 1.377 (6) | C14—H14A | 0.9800 |
| C3—C4 | 1.390 (7) | C14—H14B | 0.9800 |
| C3—H3A | 0.9500 | C14—H14C | 0.9800 |
| C11i—O1—C11 | 119.2 (5) | N1—C7—H7A | 119.2 |
| C2—O2—C14 | 117.5 (4) | C6—C7—H7A | 119.2 |
| C5—O3—H1O3 | 106 (6) | C9—C8—C13 | 118.9 (4) |
| C7—N1—C8 | 121.9 (4) | C9—C8—N1 | 116.7 (4) |
| O5—N2—O4 | 122.8 (5) | C13—C8—N1 | 124.4 (4) |
| O5—N2—C4 | 119.0 (4) | C10—C9—C8 | 120.9 (4) |
| O4—N2—C4 | 118.1 (4) | C10—C9—H9A | 119.6 |
| C2—C1—C6 | 120.3 (4) | C8—C9—H9A | 119.6 |
| C2—C1—H1A | 119.8 | C11—C10—C9 | 119.4 (4) |
| C6—C1—H1A | 119.8 | C11—C10—H10A | 120.3 |
| O2—C2—C3 | 115.4 (4) | C9—C10—H10A | 120.3 |
| O2—C2—C1 | 125.2 (4) | C10—C11—C12 | 121.2 (4) |
| C3—C2—C1 | 119.4 (4) | C10—C11—O1 | 115.9 (4) |
| C2—C3—C4 | 121.0 (4) | C12—C11—O1 | 122.7 (4) |
| C2—C3—H3A | 119.5 | C13—C12—C11 | 118.9 (4) |
| C4—C3—H3A | 119.5 | C13—C12—H12A | 120.5 |
| C3—C4—C5 | 121.3 (4) | C11—C12—H12A | 120.5 |
| C3—C4—N2 | 116.8 (4) | C12—C13—C8 | 120.7 (4) |
| C5—C4—N2 | 121.9 (4) | C12—C13—H13A | 119.7 |
| O3—C5—C4 | 121.8 (4) | C8—C13—H13A | 119.7 |
| O3—C5—C6 | 121.6 (4) | O2—C14—H14A | 109.5 |
| C4—C5—C6 | 116.6 (4) | O2—C14—H14B | 109.5 |
| C1—C6—C5 | 121.4 (4) | H14A—C14—H14B | 109.5 |
| C1—C6—C7 | 117.7 (4) | O2—C14—H14C | 109.5 |
| C5—C6—C7 | 120.9 (4) | H14A—C14—H14C | 109.5 |
| N1—C7—C6 | 121.7 (4) | H14B—C14—H14C | 109.5 |
| C14—O2—C2—C3 | −170.9 (5) | O3—C5—C6—C7 | 2.1 (7) |
| C14—O2—C2—C1 | 9.8 (8) | C4—C5—C6—C7 | −177.2 (4) |
| C6—C1—C2—O2 | 179.7 (5) | C8—N1—C7—C6 | 177.7 (4) |
| C6—C1—C2—C3 | 0.5 (8) | C1—C6—C7—N1 | −178.0 (5) |
| O2—C2—C3—C4 | −179.8 (5) | C5—C6—C7—N1 | 0.1 (7) |
| C1—C2—C3—C4 | −0.5 (8) | C7—N1—C8—C9 | −177.5 (4) |
| C2—C3—C4—C5 | 0.7 (7) | C7—N1—C8—C13 | 3.2 (8) |
| C2—C3—C4—N2 | −178.6 (5) | C13—C8—C9—C10 | −0.7 (7) |
| O5—N2—C4—C3 | 163.3 (5) | N1—C8—C9—C10 | 179.9 (4) |
| O4—N2—C4—C3 | −15.5 (7) | C8—C9—C10—C11 | 0.7 (7) |
| O5—N2—C4—C5 | −16.1 (8) | C9—C10—C11—C12 | −0.5 (7) |
| O4—N2—C4—C5 | 165.1 (5) | C9—C10—C11—O1 | −176.1 (4) |
| C3—C4—C5—O3 | 179.8 (5) | C11i—O1—C11—C10 | −145.5 (5) |
| N2—C4—C5—O3 | −0.9 (7) | C11i—O1—C11—C12 | 39.0 (4) |
| C3—C4—C5—C6 | −0.8 (7) | C10—C11—C12—C13 | 0.4 (8) |
| N2—C4—C5—C6 | 178.5 (4) | O1—C11—C12—C13 | 175.7 (4) |
| C2—C1—C6—C5 | −0.7 (7) | C11—C12—C13—C8 | −0.5 (8) |
| C2—C1—C6—C7 | 177.4 (5) | C9—C8—C13—C12 | 0.6 (8) |
| O3—C5—C6—C1 | −179.8 (5) | N1—C8—C13—C12 | 180.0 (5) |
| C4—C5—C6—C1 | 0.8 (7) |
| H··· | ||||
| O3—H1 | 0.85 (9) | 1.81 (10) | 2.591 (6) | 153 (7) |
| C7—H7 | 0.95 | 2.54 | 3.470 (7) | 167 |
| C13—H13 | 0.95 | 2.48 | 3.404 (7) | 165 |