Literature DB >> 31920466

SPRI Beads-based Size Selection in the Range of 2-10kb.

Alexei Stortchevoi1, Noelani Kamelamela1, Stuart S Levine1.   

Abstract

Application of solid-phase reversible immobilization (SPRI) beads for size selection in molecular biology should be expanded, in light of the property of the beads to accommodate to high MW intervals of DNA fragment size selection, depending on composition of bead-suspension buffer. Here we show how the conventional size selection interval of 150-800 bp be shifted to 1.5-7 Kbp with by adjusting the concentration of NaCl in the stock suspension buffer. The MW capacity of SPRI beads also change when NaCl replaced with other cations and when the concentration of polyethylene glycol (PEG) 8000 is decreased. Testing the limits of SPRI beads revealed cuts as high as 10 Kbp are possible for some salt/PEG combinations of modified SPRI beads-suspension buffers. © Association of Biomolecular Resource Facilities.

Entities:  

Keywords:  sizing, long read, sequencing, DNA

Mesh:

Substances:

Year:  2020        PMID: 31920466      PMCID: PMC6944320          DOI: 10.7171/jbt.20-3101-002

Source DB:  PubMed          Journal:  J Biomol Tech        ISSN: 1524-0215


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