Literature DB >> 31918030

Noise analysis of cytosolic calcium image data.

Divya Swaminathan1, George D Dickinson2, Angelo Demuro2, Ian Parker3.   

Abstract

Cellular Ca2+ signals are often constrained to cytosolic micro- or nano-domains where stochastic openings of Ca2+ channels cause large fluctuations in local Ca2+ concentration (Ca2+ 'noise'). With the advent of TIRF microscopy to image the fluorescence of Ca2+-sensitive probes from attoliter volumes it has become possible to directly monitor these signals, which closely track the gating of plasmalemmal and ER Ca2+-permeable channels. Nevertheless, it is likely that many physiologically important Ca2+ signals are too small to resolve as discrete events in fluorescence recordings. By analogy with noise analysis of electrophysiological data, we explore here the use of statistical approaches to detect and analyze such Ca2+ noise in images obtained using Ca2+-sensitive indicator dyes. We describe two techniques - power spectrum analysis and spatio-temporal correlation - and demonstrate that both effectively identify discrete, spatially localized calcium release events (Ca2+ puffs). Moreover, we show they are able to detect localized noise fluctuations in a case where discrete events cannot directly be resolved.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Ca(2+) imaging; Ca(2+) noise; Ca(2+) puffs; Noise analysis

Mesh:

Substances:

Year:  2019        PMID: 31918030      PMCID: PMC7384537          DOI: 10.1016/j.ceca.2019.102152

Source DB:  PubMed          Journal:  Cell Calcium        ISSN: 0143-4160            Impact factor:   6.817


  34 in total

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Journal:  Cell Calcium       Date:  1998 Nov-Dec       Impact factor: 6.817

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Authors:  Sheila L Dargan; Ian Parker
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Journal:  J Neurosci       Date:  1997-09-15       Impact factor: 6.167

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Authors:  Lorena Sigaut; Cecilia Villarruel; Silvina Ponce Dawson
Journal:  J Chem Phys       Date:  2017-03-14       Impact factor: 3.488

7.  'Trigger' events precede calcium puffs in Xenopus oocytes.

Authors:  Heather J Rose; Sheila Dargan; Jianwei Shuai; Ian Parker
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

8.  Ca(2+) puffs originate from preestablished stable clusters of inositol trisphosphate receptors.

Authors:  Ian F Smith; Steven M Wiltgen; Jianwei Shuai; Ian Parker
Journal:  Sci Signal       Date:  2009-11-24       Impact factor: 8.192

9.  Voltage clamp analysis of acetylcholine produced end-plate current fluctuations at frog neuromuscular junction.

Authors:  C R Anderson; C F Stevens
Journal:  J Physiol       Date:  1973-12       Impact factor: 5.182

10.  "Optical patch-clamping": single-channel recording by imaging Ca2+ flux through individual muscle acetylcholine receptor channels.

Authors:  Angelo Demuro; Ian Parker
Journal:  J Gen Physiol       Date:  2005-08-15       Impact factor: 4.086

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  1 in total

1.  IP3 mediated global Ca2+ signals arise through two temporally and spatially distinct modes of Ca2+ release.

Authors:  Jeffrey T Lock; Ian Parker
Journal:  Elife       Date:  2020-05-12       Impact factor: 8.140

  1 in total

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