Literature DB >> 31916476

Enhancer RNAs in cancer: regulation, mechanisms and therapeutic potential.

Joo-Hyung Lee1, Feng Xiong1, Wenbo Li1,2.   

Abstract

Enhancers are distal genomic elements critical for gene regulation and cell identify control during development and diseases. Many human cancers were found to associate with enhancer malfunction, due to genetic and epigenetic alterations, which in some cases directly drive tumour growth. Conventionally, enhancers are known to provide DNA binding motifs to recruit transcription factors (TFs) and to control target genes. However, recent progress found that most, if not all, active enhancers pervasively transcribe noncoding RNAs that are referred to as enhancer RNAs (eRNAs). Increasing evidence points to functional roles of at least a subset of eRNAs in gene regulation in both normal and cancer cells, adding new insights into the action mechanisms of enhancers. eRNA expression was observed to be widespread but also specific to tumour types and individual patients, serving as opportunities to exploit them as potential diagnosis markers or therapeutic targets. In this review, we discuss the brief history of eRNA research, their functional mechanisms and importance in cancer gene regulation, as well as their therapeutic and diagnostic values in cancer. We propose that further studies of eRNAs in cancer will offer a promising 'eRNA targeted therapy' for human cancer intervention.

Entities:  

Keywords:  Enhancers; RNA binding proteins; RNA therapy; cancer; cancer diagnosis; cancer therapy; chromatin; chromatin looping; enhancer RNAs; epigenetics; gene transcription regulation; lncRNAs; noncoding RNAs; prognosis

Year:  2020        PMID: 31916476      PMCID: PMC7567500          DOI: 10.1080/15476286.2020.1712895

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  123 in total

1.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

2.  Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants.

Authors:  Stephen C J Parker; Michael L Stitzel; D Leland Taylor; Jose Miguel Orozco; Michael R Erdos; Jennifer A Akiyama; Kelly Lammerts van Bueren; Peter S Chines; Narisu Narisu; Brian L Black; Axel Visel; Len A Pennacchio; Francis S Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-14       Impact factor: 11.205

3.  Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation.

Authors:  Juan R Alvarez-Dominguez; Wenqian Hu; Bingbing Yuan; Jiahai Shi; Staphany S Park; Austin A Gromatzky; Alexander van Oudenaarden; Harvey F Lodish
Journal:  Blood       Date:  2013-11-07       Impact factor: 22.113

4.  Epstein-Barr virus super-enhancer eRNAs are essential for MYC oncogene expression and lymphoblast proliferation.

Authors:  Jun Liang; Hufeng Zhou; Catherine Gerdt; Min Tan; Tyler Colson; Kenneth M Kaye; Elliott Kieff; Bo Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-18       Impact factor: 11.205

5.  eRNAs are required for p53-dependent enhancer activity and gene transcription.

Authors:  Carlos A Melo; Jarno Drost; Patrick J Wijchers; Harmen van de Werken; Elzo de Wit; Joachim A F Oude Vrielink; Ran Elkon; Sónia A Melo; Nicolas Léveillé; Raghu Kalluri; Wouter de Laat; Reuven Agami
Journal:  Mol Cell       Date:  2012-12-27       Impact factor: 17.970

Review 6.  Genome-wide mapping and analysis of chromosome architecture.

Authors:  Anthony D Schmitt; Ming Hu; Bing Ren
Journal:  Nat Rev Mol Cell Biol       Date:  2016-09-01       Impact factor: 94.444

7.  Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription.

Authors:  Rui Xiao; Jia-Yu Chen; Zhengyu Liang; Daji Luo; Geng Chen; Zhi John Lu; Yang Chen; Bing Zhou; Hairi Li; Xian Du; Yang Yang; Mingkui San; Xintao Wei; Wen Liu; Eric Lécuyer; Brenton R Graveley; Gene W Yeo; Christopher B Burge; Michael Q Zhang; Yu Zhou; Xiang-Dong Fu
Journal:  Cell       Date:  2019-06-27       Impact factor: 41.582

Review 8.  Molecular biology of head and neck cancer: risks and pathways.

Authors:  Michael E Stadler; Mihir R Patel; Marion E Couch; David Neil Hayes
Journal:  Hematol Oncol Clin North Am       Date:  2008-12       Impact factor: 3.722

9.  The human nuclear exosome targeting complex is loaded onto newly synthesized RNA to direct early ribonucleolysis.

Authors:  Michal Lubas; Peter Refsing Andersen; Aleks Schein; Andrzej Dziembowski; Grzegorz Kudla; Torben Heick Jensen
Journal:  Cell Rep       Date:  2015-01-08       Impact factor: 9.423

10.  Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs.

Authors:  Matthew J Hangauer; Ian W Vaughn; Michael T McManus
Journal:  PLoS Genet       Date:  2013-06-20       Impact factor: 5.917

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  27 in total

1.  A Novel and Robust Prognostic Model for Hepatocellular Carcinoma Based on Enhancer RNAs-Regulated Genes.

Authors:  Wei Zhang; Kegong Chen; Wei Tian; Qi Zhang; Lin Sun; Yupeng Wang; Meina Liu; Qiuju Zhang
Journal:  Front Oncol       Date:  2022-05-12       Impact factor: 5.738

2.  A comprehensive prognostic and immune analysis of enhancer RNA identifies IGFBP7-AS1 as a novel prognostic biomarker in Uterine Corpus Endometrial Carcinoma.

Authors:  Jinhui Liu; Jian Yin; Yuanyuan Wang; Lixin Cai; Rui Geng; Mulong Du; Zihang Zhong; Senmiao Ni; Xiaohao Huang; Hao Yu; Jianling Bai
Journal:  Biol Proced Online       Date:  2022-07-15       Impact factor: 7.717

3.  Prognostic Ability of Enhancer RNAs in Metastasis of Non-Small Cell Lung Cancer.

Authors:  Jun Liu; Jingyi Jia; Siqiao Wang; Junfang Zhang; Shuyuan Xian; Zixuan Zheng; Lin Deng; Yonghong Feng; Yuan Zhang; Jie Zhang
Journal:  Molecules       Date:  2022-06-26       Impact factor: 4.927

4.  An Integrative Analysis Revealing ZFHX4-AS1 as a Novel Prognostic Biomarker Correlated with Immune Infiltrates in Ovarian Cancer.

Authors:  Changchang Huang; Hongyin Cui; Xiaolin Lang; Fen Zhao
Journal:  J Immunol Res       Date:  2022-06-26       Impact factor: 4.493

5.  FOXP4-AS1 is a favorable prognostic-related enhancer RNA in ovarian cancer.

Authors:  Tian Hua; Yun-Jie Tian; Rui-Min Wang; Cai-Fen Zhao; Yun-Hong Kong; Rui-Qing Tian; Wei Wang; Li-Xia Ma
Journal:  Biosci Rep       Date:  2021-04-30       Impact factor: 3.840

6.  Early-life undernutrition induces enhancer RNA remodeling in mice liver.

Authors:  Yinyu Wang; Yiting Mao; Yiran Zhao; Xianfu Yi; Guolian Ding; Chuanjin Yu; Jianzhong Sheng; Xinmei Liu; Yicong Meng; Hefeng Huang
Journal:  Epigenetics Chromatin       Date:  2021-03-31       Impact factor: 4.954

7.  TBX5-AS1, an enhancer RNA, is a potential novel prognostic biomarker for lung adenocarcinoma.

Authors:  Lin Cheng; Tong Han; Bolin Chen; Kechao Nie; Weijun Peng
Journal:  BMC Cancer       Date:  2021-07-09       Impact factor: 4.430

8.  Cis-acting lnc-eRNA SEELA directly binds histone H4 to promote histone recognition and leukemia progression.

Authors:  Ke Fang; Wei Huang; Yu-Meng Sun; Tian-Qi Chen; Zhan-Cheng Zeng; Qian-Qian Yang; Qi Pan; Cai Han; Lin-Yu Sun; Xue-Qun Luo; Wen-Tao Wang; Yue-Qin Chen
Journal:  Genome Biol       Date:  2020-11-03       Impact factor: 13.583

Review 9.  The emerging role of super enhancer-derived noncoding RNAs in human cancer.

Authors:  Yutong Wang; Hui Nie; Xiaoyun He; Zhiming Liao; Yangying Zhou; Jianhua Zhou; Chunlin Ou
Journal:  Theranostics       Date:  2020-09-02       Impact factor: 11.556

10.  A prospective study revealing the role of an immune-related eRNA, WAKMAR2, in breast cancer.

Authors:  Linbang Wang; Jingkun Liu; Jiaojiao Tai; Nian Zhou; Tianji Huang; Yuzhou Xue; Zhengxue Quan
Journal:  Sci Rep       Date:  2021-07-28       Impact factor: 4.379

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