Literature DB >> 31915373

Single-cell reconstruction of the adult human heart during heart failure and recovery reveals the cellular landscape underlying cardiac function.

Li Wang1, Peng Yu2, Bingying Zhou2, Jiangping Song2, Zheng Li2, Mingzhi Zhang2, Guangran Guo2, Yin Wang2, Xiao Chen2, Leng Han3, Shengshou Hu4.   

Abstract

Owing to the prevalence and high mortality rates of cardiac diseases, a more detailed characterization of the human heart is necessary; however, this has been largely impeded by the cellular diversity of cardiac tissue and limited access to samples. Here, we show transcriptome profiling of 21,422 single cells-including cardiomyocytes (CMs) and non-CMs (NCMs)-from normal, failed and partially recovered (left ventricular assist device treatment) adult human hearts. Comparative analysis of atrial and ventricular cells revealed pronounced inter- and intracompartmental CM heterogeneity as well as compartment-specific utilization of NCM cell types as major cell-communication hubs. Systematic analysis of cellular compositions and cell-cell interaction networks showed that CM contractility and metabolism are the most prominent aspects that are correlated with changes in heart function. We also uncovered active engagement of NCMs in regulating the behaviour of CMs, exemplified by ACKR1+-endothelial cells, injection of which preserved cardiac function after injury. Beyond serving as a rich resource, our study provides insights into cell-type-targeted intervention of heart diseases.

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Year:  2020        PMID: 31915373     DOI: 10.1038/s41556-019-0446-7

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  53 in total

1.  Single-Cell Sequencing of the Mammalian Heart.

Authors:  Bas Molenaar; Eva van Rooij
Journal:  Circ Res       Date:  2018-10-12       Impact factor: 17.367

2.  Transcriptomic Profiling Maps Anatomically Patterned Subpopulations among Single Embryonic Cardiac Cells.

Authors:  Guang Li; Adele Xu; Sopheak Sim; James R Priest; Xueying Tian; Tooba Khan; Thomas Quertermous; Bin Zhou; Philip S Tsao; Stephen R Quake; Sean M Wu
Journal:  Dev Cell       Date:  2016-11-10       Impact factor: 12.270

3.  Single-Cell Sequencing of the Healthy and Diseased Heart Reveals Cytoskeleton-Associated Protein 4 as a New Modulator of Fibroblasts Activation.

Authors:  Monika M Gladka; Bas Molenaar; Hesther de Ruiter; Stefan van der Elst; Hoyee Tsui; Danielle Versteeg; Grègory P A Lacraz; Manon M H Huibers; Alexander van Oudenaarden; Eva van Rooij
Journal:  Circulation       Date:  2018-01-31       Impact factor: 29.690

4.  Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart.

Authors:  Daniel A Skelly; Galen T Squiers; Micheal A McLellan; Mohan T Bolisetty; Paul Robson; Nadia A Rosenthal; Alexander R Pinto
Journal:  Cell Rep       Date:  2018-01-16       Impact factor: 9.423

5.  Single-Cell Resolution of Temporal Gene Expression during Heart Development.

Authors:  Daniel M DeLaughter; Alexander G Bick; Hiroko Wakimoto; David McKean; Joshua M Gorham; Irfan S Kathiriya; John T Hinson; Jason Homsy; Jesse Gray; William Pu; Benoit G Bruneau; J G Seidman; Christine E Seidman
Journal:  Dev Cell       Date:  2016-11-10       Impact factor: 12.270

6.  Region and cell-type resolved quantitative proteomic map of the human heart.

Authors:  Sophia Doll; Martina Dreßen; Philipp E Geyer; Daniel N Itzhak; Christian Braun; Stefanie A Doppler; Florian Meier; Marcus-Andre Deutsch; Harald Lahm; Rüdiger Lange; Markus Krane; Matthias Mann
Journal:  Nat Commun       Date:  2017-11-13       Impact factor: 14.919

7.  Single cardiomyocyte nuclear transcriptomes reveal a lincRNA-regulated de-differentiation and cell cycle stress-response in vivo.

Authors:  Kelvin See; Wilson L W Tan; Eng How Lim; Zenia Tiang; Li Ting Lee; Peter Y Q Li; Tuan D A Luu; Matthew Ackers-Johnson; Roger S Foo
Journal:  Nat Commun       Date:  2017-08-09       Impact factor: 14.919

8.  Defining human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis.

Authors:  Jared M Churko; Priyanka Garg; Barbara Treutlein; Meenakshi Venkatasubramanian; Haodi Wu; Jaecheol Lee; Quinton N Wessells; Shih-Yu Chen; Wen-Yi Chen; Kashish Chetal; Gary Mantalas; Norma Neff; Eric Jabart; Arun Sharma; Garry P Nolan; Nathan Salomonis; Joseph C Wu
Journal:  Nat Commun       Date:  2018-11-21       Impact factor: 14.919

9.  Macrophages Facilitate Electrical Conduction in the Heart.

Authors:  Maarten Hulsmans; Sebastian Clauss; Ling Xiao; Aaron D Aguirre; Kevin R King; Alan Hanley; William J Hucker; Eike M Wülfers; Gunnar Seemann; Gabriel Courties; Yoshiko Iwamoto; Yuan Sun; Andrej J Savol; Hendrik B Sager; Kory J Lavine; Gregory A Fishbein; Diane E Capen; Nicolas Da Silva; Lucile Miquerol; Hiroko Wakimoto; Christine E Seidman; Jonathan G Seidman; Ruslan I Sadreyev; Kamila Naxerova; Richard N Mitchell; Dennis Brown; Peter Libby; Ralph Weissleder; Filip K Swirski; Peter Kohl; Claudio Vinegoni; David J Milan; Patrick T Ellinor; Matthias Nahrendorf
Journal:  Cell       Date:  2017-04-20       Impact factor: 41.582

10.  Single-nucleus transcriptomic survey of cell diversity and functional maturation in postnatal mammalian hearts.

Authors:  Peng Hu; Jian Liu; Juanjuan Zhao; Benjamin J Wilkins; Katherine Lupino; Hao Wu; Liming Pei
Journal:  Genes Dev       Date:  2018-09-25       Impact factor: 11.361

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  100 in total

1.  The landscape of cell-cell communication through single-cell transcriptomics.

Authors:  Axel A Almet; Zixuan Cang; Suoqin Jin; Qing Nie
Journal:  Curr Opin Syst Biol       Date:  2021-03-26

Review 2.  The use of machine learning to discover regulatory networks controlling biological systems.

Authors:  Rossin Erbe; Jessica Gore; Kelly Gemmill; Daria A Gaykalova; Elana J Fertig
Journal:  Mol Cell       Date:  2022-01-10       Impact factor: 17.970

3.  The heart under pressure: immune cells in fibrotic remodeling.

Authors:  Brandon Theall; Pilar Alcaide
Journal:  Curr Opin Physiol       Date:  2022-01-22

Review 4.  Genomic enhancers in cardiac development and disease.

Authors:  Chukwuemeka G Anene-Nzelu; Mick C J Lee; Wilson L W Tan; Albert Dashi; Roger S Y Foo
Journal:  Nat Rev Cardiol       Date:  2021-08-11       Impact factor: 32.419

Review 5.  Mitochondrial Ca2+, redox environment and ROS emission in heart failure: Two sides of the same coin?

Authors:  Sonia Cortassa; Magdalena Juhaszova; Miguel A Aon; Dmitry B Zorov; Steven J Sollott
Journal:  J Mol Cell Cardiol       Date:  2020-12-07       Impact factor: 5.000

Review 6.  Critical roles of macrophages in pressure overload-induced cardiac remodeling.

Authors:  Dan Yang; Han-Qing Liu; Fang-Yuan Liu; Nan Tang; Zhen Guo; Shu-Qing Ma; Peng An; Ming-Yu Wang; Hai-Ming Wu; Zheng Yang; Di Fan; Qi-Zhu Tang
Journal:  J Mol Med (Berl)       Date:  2020-10-31       Impact factor: 4.599

Review 7.  Complex Relationship Between Cardiac Fibroblasts and Cardiomyocytes in Health and Disease.

Authors:  Caitlin Hall; Katja Gehmlich; Chris Denning; Davor Pavlovic
Journal:  J Am Heart Assoc       Date:  2021-02-15       Impact factor: 5.501

Review 8.  Recent Advances in Single-Cell Profiling and Multispecific Therapeutics: Paving the Way for a New Era of Precision Medicine Targeting Cardiac Fibroblasts.

Authors:  Brandon Ason; Milena B Furtado; Sally Yu Shi; Xin Luo; Tracy M Yamawaki; Chi-Ming Li
Journal:  Curr Cardiol Rep       Date:  2021-06-03       Impact factor: 2.931

9.  Chamber-enriched gene expression profiles in failing human hearts with reduced ejection fraction.

Authors:  Xin Luo; Jun Yin; Denise Dwyer; Tracy Yamawaki; Hong Zhou; Hongfei Ge; Chun-Ya Han; Artem Shkumatov; Karen Snyder; Brandon Ason; Chi-Ming Li; Oliver Homann; Marina Stolina
Journal:  Sci Rep       Date:  2021-06-04       Impact factor: 4.379

Review 10.  Understanding the Adult Mammalian Heart at Single-Cell RNA-Seq Resolution.

Authors:  Ernesto Marín-Sedeño; Xabier Martínez de Morentin; Jose M Pérez-Pomares; David Gómez-Cabrero; Adrián Ruiz-Villalba
Journal:  Front Cell Dev Biol       Date:  2021-05-12
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