Thomas C Keaty1,2, Paul A Jensen1,2,3. 1. Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. 2. Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. 3. Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Abstract
SUMMARY: Gapsplit generates random samples from convex and non-convex constraint-based models by targeting under-sampled regions of the solution space. Gapsplit provides uniform coverage of linear, mixed-integer and general non-linear models. AVAILABILITY AND IMPLEMENTATION: Python and Matlab source code are freely available at http://jensenlab.net/tools. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
SUMMARY: Gapsplit generates random samples from convex and non-convex constraint-based models by targeting under-sampled regions of the solution space. Gapsplit provides uniform coverage of linear, mixed-integer and general non-linear models. AVAILABILITY AND IMPLEMENTATION: Python and Matlab source code are freely available at http://jensenlab.net/tools. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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