Literature DB >> 31904918

Machine Learning for Analysis of Microscopy Images: A Practical Guide.

Vadim Zinchuk1, Olga Grossenbacher-Zinchuk2.   

Abstract

The explosive growth of machine learning has provided scientists with insights into data in ways unattainable using prior research techniques. It has allowed the detection of biological features that were previously unrecognized and overlooked. However, because machine-learning methodology originates from informatics, many cell biology labs have experienced difficulties in implementing this approach. In this article, we target the rapidly expanding audience of cell and molecular biologists interested in exploiting machine learning for analysis of their research. We discuss the advantages of employing machine learning with microscopy approaches and describe the machine-learning pipeline. We also give practical guidelines for building models of cell behavior using machine learning. We conclude with an overview of the tools required for model creation, and share advice on their use.
© 2020 by John Wiley & Sons, Inc. © 2020 John Wiley & Sons, Inc.

Keywords:  convolutional neural networks; deep learning; image analysis; machine learning; microscopy

Mesh:

Year:  2020        PMID: 31904918     DOI: 10.1002/cpcb.101

Source DB:  PubMed          Journal:  Curr Protoc Cell Biol        ISSN: 1934-2616


  3 in total

1.  A strategy to quantify myofibroblast activation on a continuous spectrum.

Authors:  Alexander Hillsley; Matthew S Santoso; Sean M Engels; Kathleen N Halwachs; Lydia M Contreras; Adrianne M Rosales
Journal:  Sci Rep       Date:  2022-07-18       Impact factor: 4.996

2.  Combining multiple fluorescence imaging techniques in biology: when one microscope is not enough.

Authors:  Chad M Hobson; Jesse S Aaron
Journal:  Mol Biol Cell       Date:  2022-05-15       Impact factor: 3.612

3.  TNTdetect.AI: A Deep Learning Model for Automated Detection and Counting of Tunneling Nanotubes in Microscopy Images.

Authors:  Yasin Ceran; Hamza Ergüder; Katherine Ladner; Sophie Korenfeld; Karina Deniz; Sanyukta Padmanabhan; Phillip Wong; Murat Baday; Thomas Pengo; Emil Lou; Chirag B Patel
Journal:  Cancers (Basel)       Date:  2022-10-10       Impact factor: 6.575

  3 in total

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